RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NEURL1BA8MQ27 555 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 ADAMTS2O95450 1211 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 TFCP2Q12800 502 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 BRAPQ7Z569 592 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 MPHOSPH8Q99549 860 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 HELLSQ9NRZ9 838 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 PARP3Q9Y6F1 533 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 PALLDQ8WX93 1383 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 GOLGA6L9A6NEM1 432 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 UBASH3AP57075 661 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 EVCP57679 992 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 GCKRQ14397 625 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 DDX46Q7L014 1031 aaKnown RBP15.35■□□□□ 0.05
USP40-214ENST00000483519 UBXN6Q9BZV1 441 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 TMX1Q9H3N1 280 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 PRDM11Q9NQV5 511 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 CLIC4Q9Y696 253 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 NDUFB9Q9Y6M9 179 aa15.35■□□□□ 0.05
USP40-214ENST00000483519 MYO1BO43795 1136 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 RAD51AP2Q09MP3 1159 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 TICAM2Q86XR7 235 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 GPR161Q8N6U8 529 aaKnown RBP15.34■□□□□ 0.05
USP40-214ENST00000483519 C8orf76Q96K31 380 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 E7EWF7 191 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 SERPINC1P01008 464 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 ZC3H6P61129 1189 aaKnown RBP15.34■□□□□ 0.05
USP40-214ENST00000483519 SIPA1L3O60292 1781 aaPredicted RBP15.34■□□□□ 0.05
USP40-214ENST00000483519 COL18A1P39060 1754 aa15.34■□□□□ 0.05
USP40-214ENST00000483519 PRAMEF22A3QJZ6 481 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 VGLL3A8MV65 326 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 CHGBP05060 677 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 MYL5Q02045 173 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 SYNE3Q6ZMZ3 975 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 REXO1L1PQ8IX06 675 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 DBNDD2Q9BQY9 259 aa15.33■□□□□ 0.05
USP40-214ENST00000483519 UTP14AQ9BVJ6 771 aaKnown RBP15.33■□□□□ 0.05
USP40-214ENST00000483519 LRP6O75581 1613 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 ARHGAP6O43182 974 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 DHX16O60231 1041 aaKnown RBP15.33■□□□□ 0.04
USP40-214ENST00000483519 SEC31AO94979 1220 aaKnown RBP15.33■□□□□ 0.04
USP40-214ENST00000483519 FDPSP14324 419 aaKnown RBP15.33■□□□□ 0.04
USP40-214ENST00000483519 CMA1P23946 247 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 OAS2P29728 719 aaKnown RBP15.33■□□□□ 0.04
USP40-214ENST00000483519 CFAP100Q494V2 611 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 EPHA10Q5JZY3 1008 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 MYSM1Q5VVJ2 828 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 CC2D1AQ6P1N0 951 aaPredicted RBP15.33■□□□□ 0.04
USP40-214ENST00000483519 NEK11Q8NG66 645 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 NGLY1Q96IV0 654 aa15.33■□□□□ 0.04
USP40-214ENST00000483519 PPFIA3O75145 1194 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 TBC1D8O95759 1140 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 TOP1P11387 765 aaKnown RBP15.32■□□□□ 0.04
USP40-214ENST00000483519 PFKFB1P16118 471 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 PTPN12Q05209 780 aaKnown RBP15.32■□□□□ 0.04
USP40-214ENST00000483519 ARHGEF25Q86VW2 580 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 FBXL16Q8N461 479 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 ARFGAP3Q9NP61 516 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 POLR3DP05423 398 aaPredicted RBP15.32■□□□□ 0.04
USP40-214ENST00000483519 ATP1A3P13637 1013 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 CASQ1P31415 396 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 RFX5P48382 616 aaPredicted RBP15.32■□□□□ 0.04
USP40-214ENST00000483519 SMC1AQ14683 1233 aaKnown RBP15.32■□□□□ 0.04
USP40-214ENST00000483519 VSTM4Q8IW00 320 aa15.32■□□□□ 0.04
USP40-214ENST00000483519 AK7Q96M32 723 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 PARP4Q9UKK3 1724 aaKnown RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 PDIA6Q15084 440 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 FBXO18Q8NFZ0 1043 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 IPO4Q8TEX9 1081 aaKnown RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 C8orf37Q96NL8 207 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 MYD88Q99836 296 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 METTL22Q9BUU2 404 aaPredicted RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 HSD3B7Q9H2F3 369 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 CWC15Q9P013 229 aaKnown RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 FEZ2Q9UHY8 353 aaPredicted RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 PPP2R2CQ9Y2T4 447 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 COL14A1Q05707 1796 aaKnown RBP15.31■□□□□ 0.04
USP40-214ENST00000483519 RGPD2P0DJD1 1756 aa15.31■□□□□ 0.04
USP40-214ENST00000483519 VWA3AA6NCI4 1184 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 JAKMIP3Q5VZ66 844 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 ANO1Q5XXA6 986 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 KRBA2Q6ZNG9 492 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 SMARCE1Q969G3 411 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 TUBE1Q9UJT0 475 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 FANCGO15287 622 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 SASH3O75995 380 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 HSPD1P10809 573 aaKnown RBP15.3■□□□□ 0.04
USP40-214ENST00000483519 MAP3K9P80192 1104 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 PPP2R3AQ06190 1150 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 GNL2Q13823 731 aaKnown RBP15.3■□□□□ 0.04
USP40-214ENST00000483519 ZMYM1Q5SVZ6 1142 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 AXDND1Q5T1B0 1012 aaPredicted RBP15.3■□□□□ 0.04
USP40-214ENST00000483519 TRERF1Q96PN7 1200 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 PAG1Q9NWQ8 432 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 SYKP43405 635 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 OLFM4Q6UX06 510 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 RABGGTAQ92696 567 aa15.3■□□□□ 0.04
USP40-214ENST00000483519 ZFP91Q96JP5 570 aaPredicted RBP15.3■□□□□ 0.04
USP40-214ENST00000483519 GOLIM4O00461 696 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 GNG11P61952 73 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 ST5P78524 1137 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms