RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 STRIP1Q5VSL9 837 aa11.62□□□□□ -0.55
LIMK1-205ENST00000483414 TBC1D9Q6ZT07 1266 aa11.62□□□□□ -0.55
LIMK1-205ENST00000483414 GPATCH3Q96I76 525 aa11.62□□□□□ -0.55
LIMK1-205ENST00000483414 IQSEC3Q9UPP2 1182 aaPredicted RBP11.62□□□□□ -0.55
LIMK1-205ENST00000483414 ZNF541Q9H0D2 1346 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 HSP90AA2PQ14568 343 aaPredicted RBP11.61□□□□□ -0.55
LIMK1-205ENST00000483414 NSUN4Q96CB9 384 aaKnown RBP11.61□□□□□ -0.55
LIMK1-205ENST00000483414 MXD3Q9BW11 206 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 MYH1P12882 1939 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 GOLIM4O00461 696 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 PPIP5K2O43314 1243 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 CHMLP26374 656 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 ZC3H12CQ9C0D7 883 aaKnown RBP11.61□□□□□ -0.55
LIMK1-205ENST00000483414 GREB1LQ9C091 1923 aaPredicted RBP11.61□□□□□ -0.55
LIMK1-205ENST00000483414 GAKO14976 1311 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 PRDX5P30044 214 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 ADD2P35612 726 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 ZBED3Q96IU2 234 aaPredicted RBP11.61□□□□□ -0.55
LIMK1-205ENST00000483414 ZNRF3Q9ULT6 936 aa11.61□□□□□ -0.55
LIMK1-205ENST00000483414 XRCC6P12956 609 aaKnown RBP eCLIP11.6□□□□□ -0.55
LIMK1-205ENST00000483414 LMNB1P20700 586 aa11.6□□□□□ -0.55
LIMK1-205ENST00000483414 SUGT1Q9Y2Z0 365 aa11.6□□□□□ -0.55
LIMK1-205ENST00000483414 ZMYM1Q5SVZ6 1142 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 A0A0D9SFI3 127 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 CXCL9Q07325 125 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 FAM163AQ96GL9 167 aaPredicted RBP11.59□□□□□ -0.55
LIMK1-205ENST00000483414 DNAJC2Q99543 621 aaKnown RBP11.59□□□□□ -0.55
LIMK1-205ENST00000483414 PSMD14O00487 310 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 MECOMQ03112 1051 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 TPRNQ4KMQ1 711 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 WDR66Q8TBY9 1149 aa11.59□□□□□ -0.55
LIMK1-205ENST00000483414 RIOK1Q9BRS2 568 aaKnown RBP11.59□□□□□ -0.55
LIMK1-205ENST00000483414 GNL3LQ9NVN8 582 aaKnown RBP11.59□□□□□ -0.55
LIMK1-205ENST00000483414 TTF1Q15361 905 aaPredicted RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 UBE3CQ15386 1083 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 TMED8Q6PL24 325 aaPredicted RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 CNTROBQ8N137 903 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 MRIQ9BWK5 157 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 JAG2Q9Y219 1238 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 ZC3H4Q9UPT8 1303 aaKnown RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 USP17L3A6NCW0 530 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 USP17L4A6NCW7 530 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 M0R2C6 588 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 PDE6AP16499 860 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 GTF2IP78347 998 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 USP17L1Q7RTZ2 530 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 OSBP2Q969R2 916 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 FAM227BQ96M60 508 aa11.58□□□□□ -0.56
LIMK1-205ENST00000483414 RSBN1LQ6PCB5 846 aaPredicted RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 ZNF589Q86UQ0 364 aaPredicted RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 PUS7LQ9H0K6 701 aaKnown RBP11.58□□□□□ -0.56
LIMK1-205ENST00000483414 MAST3O60307 1309 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 FOXD4L5Q5VV16 416 aaPredicted RBP11.57□□□□□ -0.56
LIMK1-205ENST00000483414 TTLL5Q6EMB2 1281 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 LARGE2Q8N3Y3 721 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 FOXD4L4Q8WXT5 416 aaPredicted RBP11.57□□□□□ -0.56
LIMK1-205ENST00000483414 MKRN1Q9UHC7 482 aaKnown RBP11.57□□□□□ -0.56
LIMK1-205ENST00000483414 ZNF280AP59817 542 aaPredicted RBP11.57□□□□□ -0.56
LIMK1-205ENST00000483414 MFSD14BQ5SR56 506 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 GORABQ5T7V8 394 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 TBC1D22AQ8WUA7 517 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 IL17RAQ96F46 866 aa11.57□□□□□ -0.56
LIMK1-205ENST00000483414 RNF113AO15541 343 aaKnown RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 SGSM2O43147 1006 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 NMIQ13287 307 aaPredicted RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 ARHGAP27Q6ZUM4 889 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 SEC62Q99442 399 aaKnown RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 TMX4Q9H1E5 349 aaPredicted RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 SCNN1DP51172 638 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 VPS37DQ86XT2 251 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 MTMR14Q8NCE2 650 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 RPAP1Q9BWH6 1393 aaPredicted RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 ZNF532Q9HCE3 1301 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 PCDHAC2Q9Y5I4 1007 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 POLR2AP24928 1970 aaKnown RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 OTOFQ9HC10 1997 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 COL2A1P02458 1487 aaPredicted RBP11.56□□□□□ -0.56
LIMK1-205ENST00000483414 SHTN1A0MZ66 631 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 CDC45O75419 566 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 NIM1KQ8IY84 436 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 ESYT1Q9BSJ8 1104 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 MYH8P13535 1937 aa11.56□□□□□ -0.56
LIMK1-205ENST00000483414 MROH7-TTC4A0A0A0MT08 1334 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 RAD50Q92878 1312 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 RHBDL3P58872 404 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 NOL8Q76FK4 1167 aaKnown RBP11.55□□□□□ -0.56
LIMK1-205ENST00000483414 AGBL3Q8NEM8 1001 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 MYO3BQ8WXR4 1341 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 POTECB2RU33 542 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 GRIN3BO60391 1043 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 APOBEC3HQ6NTF7 200 aaKnown RBP11.55□□□□□ -0.56
LIMK1-205ENST00000483414 L3MBTL3Q96JM7 780 aaPredicted RBP11.55□□□□□ -0.56
LIMK1-205ENST00000483414 GBP4Q96PP9 640 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 LSG1Q9H089 658 aaKnown RBP11.55□□□□□ -0.56
LIMK1-205ENST00000483414 HELLSQ9NRZ9 838 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 ATAD5Q96QE3 1844 aa11.55□□□□□ -0.56
LIMK1-205ENST00000483414 GPR75-ASB3A0A0A6YYF3 556 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 PPP4CP60510 307 aa11.54□□□□□ -0.56
LIMK1-205ENST00000483414 HDLBPQ00341 1268 aaKnown RBP11.54□□□□□ -0.56
LIMK1-205ENST00000483414 ZGPATQ8N5A5 531 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms