RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MSTNO14793 375 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 PROCP04070 461 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 CYP11A1P05108 521 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 GPAT2Q6NUI2 795 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 KIAA1211Q6ZU35 1233 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 ACAD11Q709F0 780 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 UBASH3BQ8TF42 649 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 SPOCK3Q9BQ16 436 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 TMEM39AQ9NV64 488 aa10.39□□□□□ -0.75
USP40-213ENST00000483216 NOS3P29474 1203 aa10.38□□□□□ -0.75
USP40-213ENST00000483216 PPP2R3AQ06190 1150 aa10.38□□□□□ -0.75
USP40-213ENST00000483216 AP3B2Q13367 1082 aa10.38□□□□□ -0.75
USP40-213ENST00000483216 TRIM56Q9BRZ2 755 aaKnown RBP10.38□□□□□ -0.75
USP40-213ENST00000483216 CEP44Q9C0F1 390 aa10.38□□□□□ -0.75
USP40-213ENST00000483216 LOC100289279A0A1B0GTE1 492 aa10.37□□□□□ -0.75
USP40-213ENST00000483216 ITGAEP38570 1179 aa10.37□□□□□ -0.75
USP40-213ENST00000483216 IREB2P48200 963 aaKnown RBP10.37□□□□□ -0.75
USP40-213ENST00000483216 Q6ZS46 218 aa10.37□□□□□ -0.75
USP40-213ENST00000483216 FAM161BQ96MY7 647 aa10.37□□□□□ -0.75
USP40-213ENST00000483216 GPN3Q9UHW5 284 aaPredicted RBP10.37□□□□□ -0.75
USP40-213ENST00000483216 CCDC9Q9Y3X0 531 aaKnown RBP10.37□□□□□ -0.75
USP40-213ENST00000483216 MEGF11A6BM72 1044 aa10.36□□□□□ -0.75
USP40-213ENST00000483216 SORBS3O60504 671 aa10.36□□□□□ -0.75
USP40-213ENST00000483216 ALX3O95076 343 aa10.36□□□□□ -0.75
USP40-213ENST00000483216 ZNF16P17020 682 aaPredicted RBP10.36□□□□□ -0.75
USP40-213ENST00000483216 ZNF157P51786 506 aaPredicted RBP10.36□□□□□ -0.75
USP40-213ENST00000483216 AGGF1Q8N302 714 aaeCLIP10.36□□□□□ -0.75
USP40-213ENST00000483216 NECAB3Q96P71 396 aaPredicted RBP10.36□□□□□ -0.75
USP40-213ENST00000483216 USP26Q9BXU7 913 aa10.36□□□□□ -0.75
USP40-213ENST00000483216 POU4F3Q15319 338 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 TPTE2Q6XPS3 522 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 RGS22Q8NE09 1264 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 RUSC1Q9BVN2 902 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 RNF208Q9H0X6 261 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 MRS2Q9HD23 443 aa10.35□□□□□ -0.75
USP40-213ENST00000483216 RBM47A0AV96 593 aaKnown RBP10.34□□□□□ -0.75
USP40-213ENST00000483216 MAOBP27338 520 aa10.34□□□□□ -0.75
USP40-213ENST00000483216 DZIP1LQ8IYY4 767 aaKnown RBP10.34□□□□□ -0.75
USP40-213ENST00000483216 CORO1BQ9BR76 489 aa10.34□□□□□ -0.75
USP40-213ENST00000483216 SSBP4Q9BWG4 385 aaPredicted RBP10.34□□□□□ -0.75
USP40-213ENST00000483216 DLGAP3O95886 979 aa10.33□□□□□ -0.76
USP40-213ENST00000483216 EXOSC6Q5RKV6 272 aaKnown RBP10.33□□□□□ -0.76
USP40-213ENST00000483216 HP1BP3Q5SSJ5 553 aaPredicted RBP10.33□□□□□ -0.76
USP40-213ENST00000483216 TMPRSS13Q9BYE2 586 aa10.33□□□□□ -0.76
USP40-213ENST00000483216 BCL11AQ9H165 835 aa10.33□□□□□ -0.76
USP40-213ENST00000483216 ENC1O14682 589 aa10.32□□□□□ -0.76
USP40-213ENST00000483216 CTSHP09668 335 aa10.32□□□□□ -0.76
USP40-213ENST00000483216 MEGF10Q96KG7 1140 aa10.32□□□□□ -0.76
USP40-213ENST00000483216 CEP41Q9BYV8 373 aa10.32□□□□□ -0.76
USP40-213ENST00000483216 TTF2Q9UNY4 1162 aaKnown RBP10.32□□□□□ -0.76
USP40-213ENST00000483216 FBXO24O75426 580 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 CTSBP07858 339 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 GLB1P16278 677 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 NME2P22392 152 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 SV2BQ7L1I2 683 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 SULF2Q8IWU5 870 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 CRELD1Q96HD1 420 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 SUGCTQ9HAC7 445 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 VTI1BQ9UEU0 232 aa10.31□□□□□ -0.76
USP40-213ENST00000483216 ECEL1O95672 775 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 ARNTP27540 789 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 ST13P50502 369 aaKnown RBP10.3□□□□□ -0.76
USP40-213ENST00000483216 MRPL58Q14197 206 aaKnown RBP10.3□□□□□ -0.76
USP40-213ENST00000483216 NUTM2GQ5VZR2 741 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 ANKRD34AQ69YU3 496 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 PDZD3Q86UT5 571 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 SMG8Q8ND04 991 aaKnown RBP10.3□□□□□ -0.76
USP40-213ENST00000483216 EMILIN2Q9BXX0 1053 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 CYP4F12Q9HCS2 524 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 TPSG1Q9NRR2 321 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 SAMM50Q9Y512 469 aa10.3□□□□□ -0.76
USP40-213ENST00000483216 USP31Q70CQ4 1352 aa10.29□□□□□ -0.76
USP40-213ENST00000483216 GSTP1P09211 210 aaKnown RBP10.29□□□□□ -0.76
USP40-213ENST00000483216 TAF1CQ15572 869 aaPredicted RBP10.29□□□□□ -0.76
USP40-213ENST00000483216 UBL7Q96S82 380 aaPredicted RBP10.29□□□□□ -0.76
USP40-213ENST00000483216 DOC2BQ14184 412 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 MEI1Q5TIA1 1274 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 FDX2Q6P4F2 183 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 STK35Q8TDR2 534 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 KRT82Q9NSB4 513 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 PODXL2Q9NZ53 605 aa10.28□□□□□ -0.76
USP40-213ENST00000483216 PAGE1O75459 146 aa10.27□□□□□ -0.77
USP40-213ENST00000483216 CELA3AP09093 270 aa10.27□□□□□ -0.77
USP40-213ENST00000483216 BMP6P22004 513 aa10.27□□□□□ -0.77
USP40-213ENST00000483216 FAM46AQ96IP4 442 aaKnown RBP10.27□□□□□ -0.77
USP40-213ENST00000483216 SYNGAP1Q96PV0 1343 aa10.27□□□□□ -0.77
USP40-213ENST00000483216 TIAF1O95411 115 aa10.26□□□□□ -0.77
USP40-213ENST00000483216 ZNF252P-AS1Q0IIN9 211 aa10.26□□□□□ -0.77
USP40-213ENST00000483216 CCDC85BQ15834 202 aaPredicted RBP10.26□□□□□ -0.77
USP40-213ENST00000483216 UVSSAQ2YD98 709 aa10.26□□□□□ -0.77
USP40-213ENST00000483216 TP53INP1Q96A56 240 aa10.26□□□□□ -0.77
USP40-213ENST00000483216 CCDC86Q9H6F5 360 aaKnown RBP10.26□□□□□ -0.77
USP40-213ENST00000483216 HNRNPUQ00839 825 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP40-213ENST00000483216 PDE3AQ14432 1141 aa10.25□□□□□ -0.77
USP40-213ENST00000483216 LRRC14Q15048 493 aa10.25□□□□□ -0.77
USP40-213ENST00000483216 NOC4LQ9BVI4 516 aaKnown RBP10.25□□□□□ -0.77
USP40-213ENST00000483216 CYP8B1Q9UNU6 501 aa10.25□□□□□ -0.77
USP40-213ENST00000483216 SART1O43290 800 aaKnown RBP10.24□□□□□ -0.77
USP40-213ENST00000483216 PCNX4Q63HM2 1172 aa10.24□□□□□ -0.77
USP40-213ENST00000483216 SCARA3Q6AZY7 606 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms