RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 COPRSQ9NQ92 184 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 ZNF70Q9UC06 446 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-204ENST00000482065 PPP2R3BQ9Y5P8 575 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 MYH13Q9UKX3 1938 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 IL15P40933 162 aaPredicted RBP18.54■□□□□ 0.56
LIMS3-204ENST00000482065 MKRN3Q13064 507 aaKnown RBP18.54■□□□□ 0.56
LIMS3-204ENST00000482065 RASA3Q14644 834 aa18.54■□□□□ 0.56
LIMS3-204ENST00000482065 NBPF12Q5TAG4 269 aaPredicted RBP18.54■□□□□ 0.56
LIMS3-204ENST00000482065 RNF186Q9NXI6 227 aa18.54■□□□□ 0.56
LIMS3-204ENST00000482065 AKAP11Q9UKA4 1901 aa18.54■□□□□ 0.56
LIMS3-204ENST00000482065 SRGAP3O43295 1099 aa18.53■□□□□ 0.56
LIMS3-204ENST00000482065 TRPA1O75762 1119 aa18.53■□□□□ 0.56
LIMS3-204ENST00000482065 ZKSCAN2Q63HK3 967 aa18.53■□□□□ 0.56
LIMS3-204ENST00000482065 TMEM57Q8N5G2 664 aa18.53■□□□□ 0.56
LIMS3-204ENST00000482065 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.53■□□□□ 0.56
LIMS3-204ENST00000482065 ZBED9Q6R2W3 1325 aa18.52■□□□□ 0.56
LIMS3-204ENST00000482065 ADORA1P30542 326 aa18.52■□□□□ 0.56
LIMS3-204ENST00000482065 MTX1Q13505 466 aa18.52■□□□□ 0.56
LIMS3-204ENST00000482065 LDLRAD1Q5T700 205 aa18.52■□□□□ 0.56
LIMS3-204ENST00000482065 SAGE1Q9NXZ1 904 aa18.52■□□□□ 0.56
LIMS3-204ENST00000482065 TCP10L2B9ZVM9 353 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 GNAI2P04899 355 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 PHKA1P46020 1223 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 HDLBPQ00341 1268 aaKnown RBP18.51■□□□□ 0.55
LIMS3-204ENST00000482065 SUPT20HL1Q3ZLR7 823 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 CDAN1Q8IWY9 1227 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 TEKT1Q969V4 418 aa18.51■□□□□ 0.55
LIMS3-204ENST00000482065 PPP1R12BO60237 982 aaPredicted RBP18.5■□□□□ 0.55
LIMS3-204ENST00000482065 CACNB3P54284 484 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 TNFAIP1Q13829 316 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 MAP3K11Q16584 847 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 WDR66Q8TBY9 1149 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 CLMNQ96JQ2 1002 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 SUGT1Q9Y2Z0 365 aa18.5■□□□□ 0.55
LIMS3-204ENST00000482065 PNMA6EA0A0J9YXQ4 647 aa18.49■□□□□ 0.55
LIMS3-204ENST00000482065 REM2Q8IYK8 340 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-204ENST00000482065 ZDHHC15Q96MV8 337 aa18.49■□□□□ 0.55
LIMS3-204ENST00000482065 TEPSINQ96N21 525 aa18.49■□□□□ 0.55
LIMS3-204ENST00000482065 TMEM39BQ9GZU3 492 aa18.49■□□□□ 0.55
LIMS3-204ENST00000482065 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-204ENST00000482065 MAST3O60307 1309 aa18.49■□□□□ 0.55
LIMS3-204ENST00000482065 USP2O75604 605 aaPredicted RBP18.48■□□□□ 0.55
LIMS3-204ENST00000482065 TIMM10P62072 90 aa18.48■□□□□ 0.55
LIMS3-204ENST00000482065 TFCP2Q12800 502 aa18.48■□□□□ 0.55
LIMS3-204ENST00000482065 SPRYD7Q5W111 196 aa18.48■□□□□ 0.55
LIMS3-204ENST00000482065 APOBEC3HQ6NTF7 200 aaKnown RBP18.48■□□□□ 0.55
LIMS3-204ENST00000482065 ABHD8Q96I13 439 aa18.48■□□□□ 0.55
LIMS3-204ENST00000482065 GNL3LQ9NVN8 582 aaKnown RBP18.48■□□□□ 0.55
LIMS3-204ENST00000482065 A0A1B0GUL7 405 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 RLBP1P12271 317 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 PRDX5P30044 214 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 CCDC102BQ68D86 513 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 FTSJ3Q8IY81 847 aaKnown RBP18.47■□□□□ 0.55
LIMS3-204ENST00000482065 SLC10A4Q96EP9 437 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 MRIQ9BWK5 157 aa18.47■□□□□ 0.55
LIMS3-204ENST00000482065 OTOFQ9HC10 1997 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 IREB2P48200 963 aaKnown RBP18.46■□□□□ 0.55
LIMS3-204ENST00000482065 TM4SF4P48230 202 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 TNNI2P48788 182 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 DIXDC1Q155Q3 683 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 HHIPL2Q6UWX4 724 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 WNK4Q96J92 1243 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 C1orf115Q9H7X2 142 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 DENND2AQ9ULE3 1009 aa18.46■□□□□ 0.55
LIMS3-204ENST00000482065 XAGE2Q96GT9 111 aa18.45■□□□□ 0.54
LIMS3-204ENST00000482065 MCOLN1Q9GZU1 580 aa18.45■□□□□ 0.54
LIMS3-204ENST00000482065 TMOD2Q9NZR1 351 aa18.45■□□□□ 0.54
LIMS3-204ENST00000482065 SEMA3EO15041 775 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 TBC1D8O95759 1140 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 LDHBP07195 334 aaKnown RBP18.44■□□□□ 0.54
LIMS3-204ENST00000482065 SREBF2Q12772 1141 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 DGKZQ13574 1117 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 RASGRF1Q13972 1273 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 ITPRIPQ8IWB1 547 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 AKAP2Q9Y2D5 859 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 DAGLAQ9Y4D2 1042 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 SALL1Q9NSC2 1324 aa18.44■□□□□ 0.54
LIMS3-204ENST00000482065 GJA5P36382 358 aa18.43■□□□□ 0.54
LIMS3-204ENST00000482065 G3BP1Q13283 466 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIMS3-204ENST00000482065 ANKRD13AQ8IZ07 590 aa18.43■□□□□ 0.54
LIMS3-204ENST00000482065 NEUROD6Q96NK8 337 aa18.43■□□□□ 0.54
LIMS3-204ENST00000482065 UNCXA6NJT0 531 aa18.42■□□□□ 0.54
LIMS3-204ENST00000482065 POLA2Q14181 598 aa18.42■□□□□ 0.54
LIMS3-204ENST00000482065 MVPQ14764 893 aaKnown RBP18.42■□□□□ 0.54
LIMS3-204ENST00000482065 FAM83AQ86UY5 434 aa18.42■□□□□ 0.54
LIMS3-204ENST00000482065 ELP3Q9H9T3 547 aa18.42■□□□□ 0.54
LIMS3-204ENST00000482065 MANSC4A6NHS7 340 aaPredicted RBP18.41■□□□□ 0.54
LIMS3-204ENST00000482065 ZBTB7BO15156 539 aaPredicted RBP18.41■□□□□ 0.54
LIMS3-204ENST00000482065 ZBTB22O15209 634 aa18.41■□□□□ 0.54
LIMS3-204ENST00000482065 ZBTB48P10074 688 aaPredicted RBP18.41■□□□□ 0.54
LIMS3-204ENST00000482065 FKBP1CQ5VVH2 108 aa18.41■□□□□ 0.54
LIMS3-204ENST00000482065 CDC42EP5Q6NZY7 148 aa18.41■□□□□ 0.54
LIMS3-204ENST00000482065 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.41■□□□□ 0.54
LIMS3-204ENST00000482065 ATP8B2P98198 1209 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 ZGPATQ8N5A5 531 aaKnown RBP18.4■□□□□ 0.54
LIMS3-204ENST00000482065 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.4■□□□□ 0.54
LIMS3-204ENST00000482065 PANK1Q8TE04 598 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 SSH3Q8TE77 659 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
LIMS3-204ENST00000482065 R3HDMLQ9H3Y0 253 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms