RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 UQCRFS1P1P0C7P4 283 aa17.08■□□□□ 0.33
CHD3-211ENST00000481999 ARAP2Q8WZ64 1704 aa17.08■□□□□ 0.33
CHD3-211ENST00000481999 NLRP3Q96P20 1036 aa17.08■□□□□ 0.33
CHD3-211ENST00000481999 SMIM22K7EJ46 135 aa17.08■□□□□ 0.32
CHD3-211ENST00000481999 EXOSC10Q01780 885 aaKnown RBP17.08■□□□□ 0.32
CHD3-211ENST00000481999 TXNRD3Q86VQ6 643 aa17.08■□□□□ 0.32
CHD3-211ENST00000481999 TBC1D10CQ8IV04 446 aa17.08■□□□□ 0.32
CHD3-211ENST00000481999 BSDC1Q9NW68 430 aaPredicted RBP17.08■□□□□ 0.32
CHD3-211ENST00000481999 TNRC6CQ9HCJ0 1690 aaKnown RBP17.08■□□□□ 0.32
CHD3-211ENST00000481999 MBD4O95243 580 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 F13A1P00488 732 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 TTF1Q15361 905 aaPredicted RBP17.07■□□□□ 0.32
CHD3-211ENST00000481999 TPTE2Q6XPS3 522 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 GTF3C6Q969F1 213 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 PDLIM2Q96JY6 352 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 TM4SF1P30408 202 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 RPS8P62241 208 aaKnown RBP17.07■□□□□ 0.32
CHD3-211ENST00000481999 LARP1BQ659C4 914 aaKnown RBP17.07■□□□□ 0.32
CHD3-211ENST00000481999 PROM2Q8N271 834 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 AIDAQ96BJ3 306 aa17.07■□□□□ 0.32
CHD3-211ENST00000481999 GPR101Q96P66 508 aaPredicted RBP17.07■□□□□ 0.32
CHD3-211ENST00000481999 EPB41L4AQ9HCS5 686 aaPredicted RBP17.07■□□□□ 0.32
CHD3-211ENST00000481999 DNM1Q05193 864 aaKnown RBP17.06■□□□□ 0.32
CHD3-211ENST00000481999 ANKRD1Q15327 319 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 IMMTQ16891 758 aaKnown RBP17.06■□□□□ 0.32
CHD3-211ENST00000481999 USP48Q86UV5 1035 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 FIBPO43427 364 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 UBE3CQ15386 1083 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 LRRFIP1Q32MZ4 808 aaKnown RBP17.06■□□□□ 0.32
CHD3-211ENST00000481999 SLC10A5Q5PT55 438 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 LCORLQ8N3X6 602 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 LRP2BPQ9P2M1 347 aa17.06■□□□□ 0.32
CHD3-211ENST00000481999 ANTXR2P58335 489 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 TMEM87AQ8NBN3 555 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 FAM84BQ96KN1 310 aaPredicted RBP17.05■□□□□ 0.32
CHD3-211ENST00000481999 STRBPQ96SI9 672 aaKnown RBP17.05■□□□□ 0.32
CHD3-211ENST00000481999 TACC3Q9Y6A5 838 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 A0A1B0GUL6 1792 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 ZNF213O14771 459 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 CTDNEP1O95476 244 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 NYXQ9GZU5 481 aa17.05■□□□□ 0.32
CHD3-211ENST00000481999 ALDH8A1Q9H2A2 487 aaPredicted RBP17.05■□□□□ 0.32
CHD3-211ENST00000481999 VPS37DQ86XT2 251 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 SENP2Q9HC62 589 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 TAOK2Q9UL54 1235 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 COL24A1Q17RW2 1714 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 MSNP26038 577 aaKnown RBP17.04■□□□□ 0.32
CHD3-211ENST00000481999 CTDSPL2Q05D32 466 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 MAP3K12Q12852 859 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 ZNF384Q8TF68 577 aa17.04■□□□□ 0.32
CHD3-211ENST00000481999 GYS1P13807 737 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 RXRAP19793 462 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 SDR42E1Q8WUS8 393 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 PRC1O43663 620 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 ZSCAN25Q6NSZ9 544 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 MB21D2Q8IYB1 491 aaPredicted RBP17.03■□□□□ 0.32
CHD3-211ENST00000481999 CNBD1Q8NA66 436 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 ATP6V1DQ9Y5K8 247 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 ZNF804BA4D1E1 1349 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 NEDD4P46934 1319 aa17.03■□□□□ 0.32
CHD3-211ENST00000481999 CARMIL3Q8ND23 1372 aa17.02■□□□□ 0.32
CHD3-211ENST00000481999 PRR5LQ6MZQ0 368 aa17.02■□□□□ 0.32
CHD3-211ENST00000481999 CYB5R4Q7L1T6 521 aa17.02■□□□□ 0.32
CHD3-211ENST00000481999 RAI14Q9P0K7 980 aa17.02■□□□□ 0.32
CHD3-211ENST00000481999 DOCK2Q92608 1830 aa17.02■□□□□ 0.31
CHD3-211ENST00000481999 B4E1Z4 1266 aa17.02■□□□□ 0.31
CHD3-211ENST00000481999 HMGB1P09429 215 aaKnown RBP17.02■□□□□ 0.31
CHD3-211ENST00000481999 PDIA3P30101 505 aaKnown RBP17.02■□□□□ 0.31
CHD3-211ENST00000481999 EVX2Q03828 476 aa17.02■□□□□ 0.31
CHD3-211ENST00000481999 CTNNA3Q9UI47 895 aa17.02■□□□□ 0.31
CHD3-211ENST00000481999 AGXT2Q9BYV1 514 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 GSG1L2A8MUP6 293 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 GUCY1B3Q02153 619 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 CHAF1AQ13111 956 aaPredicted RBP17.01■□□□□ 0.31
CHD3-211ENST00000481999 UBE4AQ14139 1066 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 IFNL3Q8IZI9 196 aa17.01■□□□□ 0.31
CHD3-211ENST00000481999 NSUN7Q8NE18 718 aaKnown RBP17.01■□□□□ 0.31
CHD3-211ENST00000481999 KDM4AO75164 1064 aa17■□□□□ 0.31
CHD3-211ENST00000481999 CYP7A1P22680 504 aa17■□□□□ 0.31
CHD3-211ENST00000481999 DYNLL1P63167 89 aaKnown RBP17■□□□□ 0.31
CHD3-211ENST00000481999 GJB4Q9NTQ9 266 aa17■□□□□ 0.31
CHD3-211ENST00000481999 NOL7Q9UMY1 257 aaKnown RBP17■□□□□ 0.31
CHD3-211ENST00000481999 PFKFB2O60825 505 aa17■□□□□ 0.31
CHD3-211ENST00000481999 TXNRD1Q16881 649 aa17■□□□□ 0.31
CHD3-211ENST00000481999 CAVIN4Q5BKX8 364 aa17■□□□□ 0.31
CHD3-211ENST00000481999 RALYLQ86SE5 291 aaKnown RBP17■□□□□ 0.31
CHD3-211ENST00000481999 TICAM2Q86XR7 235 aa17■□□□□ 0.31
CHD3-211ENST00000481999 TFIP11Q9UBB9 837 aaKnown RBP17■□□□□ 0.31
CHD3-211ENST00000481999 SLC4A4Q9Y6R1 1079 aa17■□□□□ 0.31
CHD3-211ENST00000481999 PTPDC1A2A3K4 754 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 PRDX5P30044 214 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 DDR1Q08345 913 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 NCOA7Q8NI08 942 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 NAPBQ9H115 298 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 KLF18A0A0U1RQI7 1052 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 ZNF827Q17R98 1081 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 CCDC144CPQ8IYA2 1237 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 ZKSCAN3Q9BRR0 538 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms