RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 USP17L4A6NCW7 530 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 HDLBPQ00341 1268 aaKnown RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 CHAF1AQ13111 956 aaPredicted RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 AOC3Q16853 763 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 NAA16Q6N069 864 aaPredicted RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 USP17L1Q7RTZ2 530 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 DZIP1Q86YF9 867 aaKnown RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 NIM1KQ8IY84 436 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 LARGE2Q8N3Y3 721 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 NLGN2Q8NFZ4 835 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 JDP2Q8WYK2 163 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 NSUN4Q96CB9 384 aaKnown RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 FAM227BQ96M60 508 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 TBC1D32Q96NH3 1257 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 USP26Q9BXU7 913 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 RTN4Q9NQC3 1192 aaKnown RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 ZNF219Q9P2Y4 722 aaPredicted RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 ZNRF3Q9ULT6 936 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 IQSEC3Q9UPP2 1182 aaPredicted RBP12.2□□□□□ -0.46
USP39-215ENST00000481409 A0A0D9SFI3 127 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 PLCG2P16885 1265 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 ANAPC15P60006 121 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 GTF2IP78347 998 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 MAGEB6Q8N7X4 407 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 MAP4K1Q92918 833 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 AIDAQ96BJ3 306 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 IL17RAQ96F46 866 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 GPR101Q96P66 508 aaPredicted RBP12.19□□□□□ -0.46
USP39-215ENST00000481409 C22orf23Q9BZE7 217 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 ANO2Q9NQ90 1003 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 CTNNA3Q9UI47 895 aa12.19□□□□□ -0.46
USP39-215ENST00000481409 MYO5AQ9Y4I1 1855 aaKnown RBP12.19□□□□□ -0.46
USP39-215ENST00000481409 ZMYM6O95789 1325 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 SEC24BO95487 1268 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 BAG3O95817 575 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 CYP7A1P22680 504 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 MECOMQ03112 1051 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 DOK7Q18PE1 504 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 RNF20Q5VTR2 975 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 SLC51AQ86UW1 340 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 OSBP2Q969R2 916 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 NOL10Q9BSC4 688 aaKnown RBP12.18□□□□□ -0.46
USP39-215ENST00000481409 LSG1Q9H089 658 aaKnown RBP12.18□□□□□ -0.46
USP39-215ENST00000481409 DBNDD1Q9H9R9 158 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 WWC3Q9ULE0 1092 aa12.18□□□□□ -0.46
USP39-215ENST00000481409 NFKBIEO00221 500 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 VIL1P09327 827 aaKnown RBP12.17□□□□□ -0.46
USP39-215ENST00000481409 PRDX5P30044 214 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 HSPA4P34932 840 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 PPP4CP60510 307 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 TNIP1Q15025 636 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 ALX1Q15699 326 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 DACT2Q5SW24 774 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 GIMAP6Q6P9H5 292 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 HHIPL2Q6UWX4 724 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 AGBL3Q8NEM8 1001 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 TSHZ2Q9NRE2 1034 aa12.17□□□□□ -0.46
USP39-215ENST00000481409 ZNF277Q9NRM2 450 aaPredicted RBP12.17□□□□□ -0.46
USP39-215ENST00000481409 GAKO14976 1311 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 DICER1Q9UPY3 1922 aaKnown RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 MAGEB6P1A0A0J9YX57 407 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 GPAA1O43292 621 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 ZKSCAN1P17029 563 aaPredicted RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 LMNB1P20700 586 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 RPS12P25398 132 aaKnown RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 NT5C2P49902 561 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 TSGA10IPQ3SY00 556 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 KCNB2Q92953 911 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 STRBPQ96SI9 672 aaKnown RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 NACAP1Q9BZK3 213 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 PUS7LQ9H0K6 701 aaKnown RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 SERPINA10Q9UK55 444 aa12.16□□□□□ -0.46
USP39-215ENST00000481409 ZNF646O15015 1829 aaPredicted RBP12.16□□□□□ -0.46
USP39-215ENST00000481409 MROH7-TTC4A0A0A0MT08 1334 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 GPR75-ASB3A0A0A6YYF3 556 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 PATL2C9JE40 543 aaKnown RBP12.15□□□□□ -0.46
USP39-215ENST00000481409 FZD9O00144 591 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 GRIN3BO60391 1043 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 HSPD1P10809 573 aaKnown RBP12.15□□□□□ -0.46
USP39-215ENST00000481409 KRT32Q14532 448 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 RSBN1LQ6PCB5 846 aaPredicted RBP12.15□□□□□ -0.46
USP39-215ENST00000481409 ZNF589Q86UQ0 364 aaPredicted RBP12.15□□□□□ -0.46
USP39-215ENST00000481409 DDRGK1Q96HY6 314 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 ATP8A2Q9NTI2 1148 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 HDAC9Q9UKV0 1011 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 TAOK2Q9UL54 1235 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 MYH2Q9UKX2 1941 aa12.15□□□□□ -0.46
USP39-215ENST00000481409 ZC3H4Q9UPT8 1303 aaKnown RBP12.14□□□□□ -0.47
USP39-215ENST00000481409 SCN9AQ15858 1988 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 M0R2C6 588 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 EIF6P56537 245 aaKnown RBP12.14□□□□□ -0.47
USP39-215ENST00000481409 NECTIN1Q15223 517 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 CIAPIN1Q6FI81 312 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 ARHGAP27Q6ZUM4 889 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 TEKT1Q969V4 418 aa12.14□□□□□ -0.47
USP39-215ENST00000481409 SEC62Q99442 399 aaKnown RBP12.14□□□□□ -0.47
USP39-215ENST00000481409 RIOK1Q9BRS2 568 aaKnown RBP12.14□□□□□ -0.47
USP39-215ENST00000481409 CRNKL1Q9BZJ0 848 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms