RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MTF1Q14872 753 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 ANO1Q5XXA6 986 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 TTLL5Q6EMB2 1281 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 RHOXF2Q9BQY4 288 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 JCADQ9P266 1359 aa21.58■■□□□ 1.04
CCDC88B-207ENST00000479965 TMEM139Q8IV31 216 aa21.58■■□□□ 1.04
CCDC88B-207ENST00000479965 ABTB2Q8N961 1025 aa21.58■■□□□ 1.04
CCDC88B-207ENST00000479965 POLR3EQ9NVU0 708 aa21.57■■□□□ 1.04
CCDC88B-207ENST00000479965 FCHSD1Q86WN1 690 aa21.57■■□□□ 1.04
CCDC88B-207ENST00000479965 SIRT1Q96EB6 747 aa21.57■■□□□ 1.04
CCDC88B-207ENST00000479965 SALL1Q9NSC2 1324 aa21.57■■□□□ 1.04
CCDC88B-207ENST00000479965 GOLGA6L9A6NEM1 432 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 KIF28PB7ZC32 967 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 DDX58O95786 925 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 IVLP07476 585 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 HDGFP51858 240 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 EXOSC10Q01780 885 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 CMA1P23946 247 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 TTC31Q49AM3 519 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 KIFC2Q96AC6 838 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 PSD3Q9NYI0 1048 aa21.56■■□□□ 1.04
CCDC88B-207ENST00000479965 TFRCP02786 760 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 STK11IPQ8N1F8 1099 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 CPLX3Q8WVH0 158 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 INTS13Q9NVM9 706 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 BRD3Q15059 726 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 HSP90B2PQ58FF3 399 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 AXDND1Q5T1B0 1012 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 ICE2Q659A1 982 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 HDXQ7Z353 690 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 CLIC6Q96NY7 704 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 A0A1B0GUL7 405 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 GOLGA8BA8MQT2 603 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 NBPF6Q5VWK0 638 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 NBPF4Q96M43 638 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 DRC1Q96MC2 740 aa21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 ESF1Q9H501 851 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 MRPL44Q9H9J2 332 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-207ENST00000479965 EIF3JO75822 258 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 TRMT44Q8IYL2 757 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 ZNF274Q96GC6 653 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 ABCB6Q9NP58 842 aa21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 KLF18A0A0U1RQI7 1052 aa21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 IGKV5-2P06315 115 aa21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 NEXNQ0ZGT2 675 aa21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 PNKPQ96T60 521 aa21.54■■□□□ 1.04
CCDC88B-207ENST00000479965 A0A0U1RQJ8 604 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 MAP2K7O14733 419 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 STX10O60499 249 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 SPECC1Q5M775 1068 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 PACS2Q86VP3 889 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 ATRIPQ8WXE1 791 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 MYD88Q99836 296 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 NEO1Q92859 1461 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 EIF3CLB5ME19 914 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 KIF4BQ2VIQ3 1234 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 SRGAP1Q7Z6B7 1085 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 TC2NQ8N9U0 490 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 CNNM3Q8NE01 707 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 EIF3CQ99613 913 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 PDE4BQ07343 736 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 BEND6Q5SZJ8 279 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 JRKLQ9Y4A0 524 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 PCDHA5Q9Y5H7 936 aa21.53■■□□□ 1.04
CCDC88B-207ENST00000479965 SOWAHDA6NJG2 315 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 ERLIN1O75477 346 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 HSPD1P10809 573 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 KBTBD3Q8NAB2 608 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 AIFM3Q96NN9 605 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 ANKZF1Q9H8Y5 726 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 CEMIPQ8WUJ3 1361 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 CUTAO60888 179 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 CDC27P30260 824 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 SPECC1LQ69YQ0 1117 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 CTR9Q6PD62 1173 aa21.52■■□□□ 1.04
CCDC88B-207ENST00000479965 FOXN1O15353 648 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 ZNF827Q17R98 1081 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 HAUS7Q99871 368 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 NFE2L3Q9Y4A8 694 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 PLEKHG2Q9H7P9 1386 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 PIP4K2AP48426 406 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 ZNF569Q5MCW4 686 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 BRAPQ7Z569 592 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 LRRC59Q96AG4 307 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 RNF216Q9NWF9 866 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 TUBE1Q9UJT0 475 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 CCDC175P0C221 793 aa21.51■■□□□ 1.03
CCDC88B-207ENST00000479965 LRRC37A3O60309 1634 aa21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 LONRF3Q496Y0 759 aa21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 SHC4Q6S5L8 630 aa21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 KIF5CO60282 957 aa21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 MAGEA9P43362 315 aa21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 FOXP4Q8IVH2 680 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-207ENST00000479965 KIF23Q02241 960 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 AGXT2Q9BYV1 514 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 N4BP2Q86UW6 1770 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 RXRAP19793 462 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 SLC39A14Q15043 492 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 C1orf141Q5JVX7 400 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 UBE3BQ7Z3V4 1068 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms