RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	MYH13	Q9UKX3	1938 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	FOXP2	O15409	715 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	MBD4	O95243	580 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	LDHB	P07195	334 aa	Known RBP	13.42	□□□□□ -0.26
APTX-223	ENST00000479656	AOC3	Q16853	763 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	DALRD3	Q5D0E6	543 aa	Known RBP	13.42	□□□□□ -0.26
APTX-223	ENST00000479656	RTKN2	Q8IZC4	609 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	SUPT20H	Q8NEM7	779 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	SNED1	Q8TER0	1413 aa		13.42	□□□□□ -0.26
APTX-223	ENST00000479656	ZKSCAN1	P17029	563 aa	Predicted RBP	13.41	□□□□□ -0.26
APTX-223	ENST00000479656	GRIPAP1	Q4V328	841 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	TTLL5	Q6EMB2	1281 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	FBXW7	Q969H0	707 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	IL17RA	Q96F46	866 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	TBC1D2	Q9BYX2	928 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	KCNQ5	Q9NR82	932 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	FAM205A	Q6ZU69	1335 aa		13.41	□□□□□ -0.26
APTX-223	ENST00000479656	KIAA1551	Q9HCM1	1747 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	FGA	P02671	866 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	APP	P05067	770 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	NEK4	P51957	841 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	BECN1	Q14457	450 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	ADCK5	Q3MIX3	580 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	MFSD14B	Q5SR56	506 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	RNF20	Q5VTR2	975 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	PODN	Q7Z5L7	613 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	DZIP1	Q86YF9	867 aa	Known RBP	13.4	□□□□□ -0.26
APTX-223	ENST00000479656	LCORL	Q8N3X6	602 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	TAF6L	Q9Y6J9	622 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	MAGEB6P1	A0A0J9YX57	407 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	CD2BP2	O95400	341 aa	Known RBP	13.4	□□□□□ -0.26
APTX-223	ENST00000479656	CYP21A2	P08686	494 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	DYNLL1	P63167	89 aa	Known RBP	13.4	□□□□□ -0.26
APTX-223	ENST00000479656	KIAA2012	Q0VF49	1180 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	NLGN2	Q8NFZ4	835 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	TBC1D22A	Q8WUA7	517 aa		13.4	□□□□□ -0.26
APTX-223	ENST00000479656	DAXX	Q9UER7	740 aa	Predicted RBP	13.4	□□□□□ -0.26
APTX-223	ENST00000479656	PATL2	C9JE40	543 aa	Known RBP	13.39	□□□□□ -0.27
APTX-223	ENST00000479656	PPIP5K2	O43314	1243 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	PRKAB2	O43741	272 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	ECE2	O60344	883 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	SNX21	Q969T3	373 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	PSMD1	Q99460	953 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	RIOK1	Q9BRS2	568 aa	Known RBP	13.39	□□□□□ -0.27
APTX-223	ENST00000479656	MXD3	Q9BW11	206 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	UPF3B	Q9BZI7	483 aa	Known RBP	13.39	□□□□□ -0.27
APTX-223	ENST00000479656	BCS1L	Q9Y276	419 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	CHD4	Q14839	1912 aa		13.39	□□□□□ -0.27
APTX-223	ENST00000479656	DIXDC1	Q155Q3	683 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	TSGA10IP	Q3SY00	556 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	SOGA3	Q5TF21	947 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	JAKMIP1	Q96N16	626 aa	Known RBP	13.38	□□□□□ -0.27
APTX-223	ENST00000479656	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.38	□□□□□ -0.27
APTX-223	ENST00000479656	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
APTX-223	ENST00000479656	CTNNA3	Q9UI47	895 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	SLC4A4	Q9Y6R1	1079 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	GSG1L2	A8MUP6	293 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	IGSF3	O75054	1194 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	CPA1	P15085	419 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	HSCB	Q8IWL3	235 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	IFNL3	Q8IZI9	196 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	CERS5	Q8N5B7	392 aa		13.38	□□□□□ -0.27
APTX-223	ENST00000479656	ST18	O60284	1047 aa		13.37	□□□□□ -0.27
APTX-223	ENST00000479656	GNAT2	P19087	354 aa		13.37	□□□□□ -0.27
APTX-223	ENST00000479656	CAST	P20810	708 aa	Known RBP	13.37	□□□□□ -0.27
APTX-223	ENST00000479656	GSTO1	P78417	241 aa		13.37	□□□□□ -0.27
APTX-223	ENST00000479656		F8W031	263 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-223	ENST00000479656	LDHC	P07864	332 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	HAND2	P61296	217 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	COL9A3	Q14050	684 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-223	ENST00000479656	IMMT	Q16891	758 aa	Known RBP	13.36	□□□□□ -0.27
APTX-223	ENST00000479656	TMED8	Q6PL24	325 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-223	ENST00000479656	SDR42E1	Q8WUS8	393 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	TM6SF1	Q9BZW5	370 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	ZSWIM6	Q9HCJ5	1215 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-223	ENST00000479656	ZNF213	O14771	459 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	PSMA5	P28066	241 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	ALX1	Q15699	326 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	STRIP1	Q5VSL9	837 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	STOX1	Q6ZVD7	989 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	LARGE2	Q8N3Y3	721 aa		13.36	□□□□□ -0.27
APTX-223	ENST00000479656	CCDC88A	Q3V6T2	1871 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	USP17L3	A6NCW0	530 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	USP17L4	A6NCW7	530 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	YDJC	A8MPS7	323 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	KRT32	Q14532	448 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	RUFY3	Q7L099	469 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	USP17L1	Q7RTZ2	530 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	NEK1	Q96PY6	1258 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	NACAP1	Q9BZK3	213 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.35	□□□□□ -0.27
APTX-223	ENST00000479656	NAPB	Q9H115	298 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	VPS33B	Q9H267	617 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	SUGT1	Q9Y2Z0	365 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	CYP46A1	Q9Y6A2	500 aa		13.35	□□□□□ -0.27
APTX-223	ENST00000479656	MROH7-TTC4	A0A0A0MT08	1334 aa		13.34	□□□□□ -0.27
APTX-223	ENST00000479656		E7EWF7	191 aa		13.34	□□□□□ -0.27
APTX-223	ENST00000479656	DACT2	Q5SW24	774 aa		13.34	□□□□□ -0.27
APTX-223	ENST00000479656	BLOC1S2	Q6QNY1	142 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms