RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CLRN2A0PK11 232 aa26.98■■□□□ 1.91
COL9A3-211ENST00000477612 SEMA3EO15041 775 aa26.98■■□□□ 1.91
COL9A3-211ENST00000477612 POLA2Q14181 598 aa26.98■■□□□ 1.91
COL9A3-211ENST00000477612 MOB2Q70IA6 237 aa26.98■■□□□ 1.91
COL9A3-211ENST00000477612 GNL3LQ9NVN8 582 aaKnown RBP26.98■■□□□ 1.91
COL9A3-211ENST00000477612 AKAP2Q9Y2D5 859 aa26.98■■□□□ 1.91
COL9A3-211ENST00000477612 CA12O43570 354 aa26.97■■□□□ 1.91
COL9A3-211ENST00000477612 LBX1P52954 281 aa26.97■■□□□ 1.91
COL9A3-211ENST00000477612 ATP8B2P98198 1209 aa26.97■■□□□ 1.91
COL9A3-211ENST00000477612 ZNF70Q9UC06 446 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-211ENST00000477612 MAST3O60307 1309 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 UBE2Q2LH0YL09 131 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 TIMM10P62072 90 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 TFCP2Q12800 502 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 MAP3K11Q16584 847 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 RASAL3Q86YV0 1011 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 SSH3Q8TE77 659 aa26.96■■□□□ 1.91
COL9A3-211ENST00000477612 TDRD3Q9H7E2 651 aaKnown RBP26.96■■□□□ 1.91
COL9A3-211ENST00000477612 SALL1Q9NSC2 1324 aa26.95■■□□□ 1.91
COL9A3-211ENST00000477612 A0A1B0GUL7 405 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 PHKA1P46020 1223 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 KIF23Q02241 960 aaPredicted RBP26.95■■□□□ 1.9
COL9A3-211ENST00000477612 TNFAIP1Q13829 316 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 CCDC102BQ68D86 513 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 HHIPL2Q6UWX4 724 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 ARMC9Q7Z3E5 817 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 ITPRIPQ8IWB1 547 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 TEKT1Q969V4 418 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 ZDHHC15Q96MV8 337 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 VEZTQ9HBM0 779 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 DENND2AQ9ULE3 1009 aa26.95■■□□□ 1.9
COL9A3-211ENST00000477612 SSC5DA1L4H1 1573 aa26.94■■□□□ 1.9
COL9A3-211ENST00000477612 ADORA1P30542 326 aa26.94■■□□□ 1.9
COL9A3-211ENST00000477612 RASA3Q14644 834 aa26.94■■□□□ 1.9
COL9A3-211ENST00000477612 LDLRAD1Q5T700 205 aa26.94■■□□□ 1.9
COL9A3-211ENST00000477612 REM2Q8IYK8 340 aaPredicted RBP26.94■■□□□ 1.9
COL9A3-211ENST00000477612 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.94■■□□□ 1.9
COL9A3-211ENST00000477612 MS4A1P11836 297 aa26.93■■□□□ 1.9
COL9A3-211ENST00000477612 G3BP1Q13283 466 aaKnown RBP eCLIP26.93■■□□□ 1.9
COL9A3-211ENST00000477612 TTLL12Q14166 644 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-211ENST00000477612 SUPT20HL1Q3ZLR7 823 aa26.93■■□□□ 1.9
COL9A3-211ENST00000477612 PDS5AQ29RF7 1337 aaKnown RBP26.92■■□□□ 1.9
COL9A3-211ENST00000477612 UNCXA6NJT0 531 aa26.92■■□□□ 1.9
COL9A3-211ENST00000477612 XAGE2Q96GT9 111 aa26.92■■□□□ 1.9
COL9A3-211ENST00000477612 LAMB1P07942 1786 aa26.92■■□□□ 1.9
COL9A3-211ENST00000477612 NBPF12Q5TAG4 269 aaPredicted RBP26.91■■□□□ 1.9
COL9A3-211ENST00000477612 APOBEC3HQ6NTF7 200 aaKnown RBP26.91■■□□□ 1.9
COL9A3-211ENST00000477612 TNS4Q8IZW8 715 aa26.91■■□□□ 1.9
COL9A3-211ENST00000477612 CSRNP1Q96S65 589 aa26.91■■□□□ 1.9
COL9A3-211ENST00000477612 MYH2Q9UKX2 1941 aa26.9■■□□□ 1.9
COL9A3-211ENST00000477612 PPP1R12BO60237 982 aaPredicted RBP26.9■■□□□ 1.9
COL9A3-211ENST00000477612 TEPSINQ96N21 525 aa26.9■■□□□ 1.9
COL9A3-211ENST00000477612 ANGEL1Q9UNK9 670 aaKnown RBP26.9■■□□□ 1.9
COL9A3-211ENST00000477612 NOP58Q9Y2X3 529 aaKnown RBP26.9■■□□□ 1.9
COL9A3-211ENST00000477612 MVPQ14764 893 aaKnown RBP26.89■■□□□ 1.9
COL9A3-211ENST00000477612 FKBP1CQ5VVH2 108 aa26.89■■□□□ 1.9
COL9A3-211ENST00000477612 PANK1Q8TE04 598 aa26.89■■□□□ 1.9
COL9A3-211ENST00000477612 C1orf115Q9H7X2 142 aa26.89■■□□□ 1.9
COL9A3-211ENST00000477612 GPR108Q9NPR9 543 aa26.89■■□□□ 1.9
COL9A3-211ENST00000477612 PRDX5P30044 214 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 TNNI2P48788 182 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 PRKG1Q13976 671 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 ZGPATQ8N5A5 531 aaKnown RBP26.88■■□□□ 1.89
COL9A3-211ENST00000477612 SAGE1Q9NXZ1 904 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 RCAN3Q9UKA8 241 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 CASP8AP2Q9UKL3 1982 aa26.88■■□□□ 1.89
COL9A3-211ENST00000477612 USP2O75604 605 aaPredicted RBP26.87■■□□□ 1.89
COL9A3-211ENST00000477612 LDHBP07195 334 aaKnown RBP26.87■■□□□ 1.89
COL9A3-211ENST00000477612 RASGRF1Q13972 1273 aa26.87■■□□□ 1.89
COL9A3-211ENST00000477612 FAM83AQ86UY5 434 aa26.87■■□□□ 1.89
COL9A3-211ENST00000477612 FZD1Q9UP38 647 aa26.87■■□□□ 1.89
COL9A3-211ENST00000477612 TCP10L2B9ZVM9 353 aa26.86■■□□□ 1.89
COL9A3-211ENST00000477612 NEUROD6Q96NK8 337 aa26.86■■□□□ 1.89
COL9A3-211ENST00000477612 OTOFQ9HC10 1997 aa26.86■■□□□ 1.89
COL9A3-211ENST00000477612 CEP85Q6P2H3 762 aa26.85■■□□□ 1.89
COL9A3-211ENST00000477612 TSKSQ9UJT2 592 aa26.85■■□□□ 1.89
COL9A3-211ENST00000477612 DAGLAQ9Y4D2 1042 aa26.85■■□□□ 1.89
COL9A3-211ENST00000477612 SURF6O75683 361 aaKnown RBP26.84■■□□□ 1.89
COL9A3-211ENST00000477612 TM4SF4P48230 202 aa26.84■■□□□ 1.89
COL9A3-211ENST00000477612 TMEM39BQ9GZU3 492 aa26.84■■□□□ 1.89
COL9A3-211ENST00000477612 RNF186Q9NXI6 227 aa26.84■■□□□ 1.89
COL9A3-211ENST00000477612 ARID4AP29374 1257 aaPredicted RBP26.83■■□□□ 1.89
COL9A3-211ENST00000477612 IREB2P48200 963 aaKnown RBP26.83■■□□□ 1.89
COL9A3-211ENST00000477612 TMOD2Q9NZR1 351 aa26.83■■□□□ 1.89
COL9A3-211ENST00000477612 DIXDC1Q155Q3 683 aa26.82■■□□□ 1.88
COL9A3-211ENST00000477612 SPRYD7Q5W111 196 aa26.82■■□□□ 1.88
COL9A3-211ENST00000477612 CDAN1Q8IWY9 1227 aa26.82■■□□□ 1.88
COL9A3-211ENST00000477612 RPAP1Q9BWH6 1393 aaPredicted RBP26.82■■□□□ 1.88
COL9A3-211ENST00000477612 CACNB3P54284 484 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 TNNI3KQ59H18 835 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 ANKRD13AQ8IZ07 590 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 SLC10A4Q96EP9 437 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 FAM163AQ96GL9 167 aaPredicted RBP26.81■■□□□ 1.88
COL9A3-211ENST00000477612 HMG20BQ9P0W2 317 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 DDX19BQ9UMR2 479 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 FPGT-TNNI3KV9GXZ4 949 aa26.81■■□□□ 1.88
COL9A3-211ENST00000477612 SPTY2D1Q68D10 685 aaPredicted RBP26.8■■□□□ 1.88
COL9A3-211ENST00000477612 GAKO14976 1311 aa26.8■■□□□ 1.88
COL9A3-211ENST00000477612 AK9Q5TCS8 1911 aa26.8■■□□□ 1.88
COL9A3-211ENST00000477612 TRPA1O75762 1119 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms