RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 TBC1D9Q6ZT07 1266 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 KRT26Q7Z3Y9 468 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 AACSQ86V21 672 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 KIF1BPQ96EK5 621 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 SNRKQ9NRH2 765 aa11.92□□□□□ -0.5
HDAC3-208ENST00000476739 TRPM7Q96QT4 1865 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 SALL1Q9NSC2 1324 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 CLRN2A0PK11 232 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 RAB11FIP3O75154 756 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 MMP14P50281 582 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 DIXDC1Q155Q3 683 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 TTC39AQ5SRH9 613 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 SPATA5Q8NB90 893 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 DCTPP1Q9H773 170 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 ZNF408Q9H9D4 720 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 SERPINA10Q9UK55 444 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 NDUFB9Q9Y6M9 179 aa11.91□□□□□ -0.5
HDAC3-208ENST00000476739 ECM29Q5VYK3 1845 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 PDS5AQ29RF7 1337 aaKnown RBP11.9□□□□□ -0.5
HDAC3-208ENST00000476739 PITPNM2Q9BZ72 1349 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 TMEM88BA6NKF7 163 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 CELF2O95319 508 aaKnown RBP11.9□□□□□ -0.5
HDAC3-208ENST00000476739 CCDC158Q5M9N0 1113 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 SULF1Q8IWU6 871 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 CLASRPQ8N2M8 674 aaKnown RBP11.9□□□□□ -0.5
HDAC3-208ENST00000476739 DNAJC5GQ8N7S2 189 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 ZNF384Q8TF68 577 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 TDRD3Q9H7E2 651 aaKnown RBP11.9□□□□□ -0.5
HDAC3-208ENST00000476739 CREBZFQ9NS37 354 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 ABCF2Q9UG63 623 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 SUGT1Q9Y2Z0 365 aa11.9□□□□□ -0.5
HDAC3-208ENST00000476739 MYO5AQ9Y4I1 1855 aaKnown RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 CYP2E1P05181 493 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 LDHBP07195 334 aaKnown RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 UQCRFS1P1P0C7P4 283 aa11.89□□□□□ -0.51
HDAC3-208ENST00000476739 ZAP70P43403 619 aa11.89□□□□□ -0.51
HDAC3-208ENST00000476739 HDLBPQ00341 1268 aaKnown RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 APOBEC3HQ6NTF7 200 aaKnown RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 TEKT1Q969V4 418 aa11.89□□□□□ -0.51
HDAC3-208ENST00000476739 CDCA5Q96FF9 252 aa11.89□□□□□ -0.51
HDAC3-208ENST00000476739 ZNF512BQ96KM6 892 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-208ENST00000476739 LRRCC1Q9C099 1032 aa11.89□□□□□ -0.51
HDAC3-208ENST00000476739 MYH2Q9UKX2 1941 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 CACNB3P54284 484 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 SPDYE2Q495Y8 402 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 HHIPL2Q6UWX4 724 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 ZDHHC15Q96MV8 337 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 MRIQ9BWK5 157 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 ANTXR1Q9H6X2 564 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 VEZTQ9HBM0 779 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 ZNF70Q9UC06 446 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-208ENST00000476739 MKRN1Q9UHC7 482 aaKnown RBP11.88□□□□□ -0.51
HDAC3-208ENST00000476739 DAGLAQ9Y4D2 1042 aa11.88□□□□□ -0.51
HDAC3-208ENST00000476739 MAST3O60307 1309 aa11.87□□□□□ -0.51
HDAC3-208ENST00000476739 IGHDP01880 384 aa11.87□□□□□ -0.51
HDAC3-208ENST00000476739 IFIT2P09913 472 aaKnown RBP11.87□□□□□ -0.51
HDAC3-208ENST00000476739 MECOMQ03112 1051 aa11.87□□□□□ -0.51
HDAC3-208ENST00000476739 ERICH6Q7L0X2 663 aa11.87□□□□□ -0.51
HDAC3-208ENST00000476739 APOBEC3FQ8IUX4 373 aaKnown RBP11.87□□□□□ -0.51
HDAC3-208ENST00000476739 CDAN1Q8IWY9 1227 aa11.87□□□□□ -0.51
HDAC3-208ENST00000476739 ZGPATQ8N5A5 531 aaKnown RBP11.87□□□□□ -0.51
HDAC3-208ENST00000476739 NSUN4Q96CB9 384 aaKnown RBP11.87□□□□□ -0.51
HDAC3-208ENST00000476739 PIH1D3Q9NQM4 214 aaKnown RBP11.87□□□□□ -0.51
HDAC3-208ENST00000476739 TCP10L2B9ZVM9 353 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 MYO1BO43795 1136 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-208ENST00000476739 MOB2Q70IA6 237 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 DZIP1Q86YF9 867 aaKnown RBP11.86□□□□□ -0.51
HDAC3-208ENST00000476739 DEFB129Q9H1M3 183 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 RAI14Q9P0K7 980 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 ABT1Q9ULW3 272 aaKnown RBP11.86□□□□□ -0.51
HDAC3-208ENST00000476739 FZD1Q9UP38 647 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 TLL2Q9Y6L7 1015 aa11.86□□□□□ -0.51
HDAC3-208ENST00000476739 CNTNAP1P78357 1384 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 RASA3Q14644 834 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 TSHZ3Q63HK5 1081 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 SPTY2D1Q68D10 685 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-208ENST00000476739 CDC42EP5Q6NZY7 148 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 ADGRA1Q86SQ6 560 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 SAPCD2Q86UD0 394 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 OTUD7AQ8TE49 926 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-208ENST00000476739 KLRG1Q96E93 195 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 EDC3Q96F86 508 aaKnown RBP11.85□□□□□ -0.51
HDAC3-208ENST00000476739 GBA2Q9HCG7 927 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-208ENST00000476739 LRP2BPQ9P2M1 347 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 GAKO14976 1311 aa11.85□□□□□ -0.51
HDAC3-208ENST00000476739 SSC5DA1L4H1 1573 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 NFIAQ12857 509 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 AAMPQ13685 434 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 PRKG1Q13976 671 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 DEFB115Q30KQ5 88 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 NBPF12Q5TAG4 269 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-208ENST00000476739 FAM163AQ96GL9 167 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-208ENST00000476739 TEPSINQ96N21 525 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 TMEM39BQ9GZU3 492 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 BOLA2Q9H3K6 86 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 USP40Q9NVE5 1235 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 MROH7-TTC4A0A0A0MT08 1334 aa11.84□□□□□ -0.51
HDAC3-208ENST00000476739 DOCK2Q92608 1830 aa11.83□□□□□ -0.51
HDAC3-208ENST00000476739 GPR75-ASB3A0A0A6YYF3 556 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms