RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 SCARF2Q96GP6 870 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-206ENST00000476045 MDFIQ99750 246 aa5.85□□□□□ -1.47
VPS13D-206ENST00000476045 CARD11Q9BXL7 1154 aa5.85□□□□□ -1.47
VPS13D-206ENST00000476045 TERF2IPQ9NYB0 399 aa5.85□□□□□ -1.47
VPS13D-206ENST00000476045 CABP1Q9NZU7 370 aa5.85□□□□□ -1.47
VPS13D-206ENST00000476045 TFIP11Q9UBB9 837 aaKnown RBP5.85□□□□□ -1.47
VPS13D-206ENST00000476045 SMG6Q86US8 1419 aaKnown RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 ANKRD36BQ8N2N9 1353 aa5.84□□□□□ -1.47
VPS13D-206ENST00000476045 ATXN7O15265 892 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 PTK7Q13308 1070 aa5.84□□□□□ -1.47
VPS13D-206ENST00000476045 NUTM2GQ5VZR2 741 aa5.84□□□□□ -1.47
VPS13D-206ENST00000476045 LARP1Q6PKG0 1096 aaKnown RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 C1orf229Q6ZS94 237 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 ARHGEF25Q86VW2 580 aa5.84□□□□□ -1.47
VPS13D-206ENST00000476045 TSPAN10Q9H1Z9 355 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 DNMT3AQ9Y6K1 912 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-206ENST00000476045 PKD1L3Q7Z443 1732 aa5.84□□□□□ -1.47
VPS13D-206ENST00000476045 KIF24Q5T7B8 1368 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 USP47Q96K76 1375 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 PLEKHG2Q9H7P9 1386 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 LY75O60449 1722 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 SERTM1A2A2V5 107 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 SHISA8B8ZZ34 492 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 MAPTP10636 758 aaKnown RBP5.83□□□□□ -1.48
VPS13D-206ENST00000476045 CTBSQ01459 385 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 DDB1Q16531 1140 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 CDCA8Q53HL2 280 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 SH3PXD2AQ5TCZ1 1133 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 TOM1L2Q6ZVM7 507 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 GAS2L2Q8NHY3 880 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 CALR3Q96L12 384 aaKnown RBP5.83□□□□□ -1.48
VPS13D-206ENST00000476045 CARD10Q9BWT7 1032 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 USP35Q9P2H5 1018 aa5.83□□□□□ -1.48
VPS13D-206ENST00000476045 COL24A1Q17RW2 1714 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 CHD4Q14839 1912 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 TRIM37O94972 964 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 EPXP11678 715 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 BMP4P12644 408 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 CRTC2Q53ET0 693 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-206ENST00000476045 TMEM151AQ8N4L1 468 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 TSEN2Q8NCE0 465 aaKnown RBP5.82□□□□□ -1.48
VPS13D-206ENST00000476045 ZNF594Q96JF6 807 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-206ENST00000476045 CAMKK2Q96RR4 588 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 SIN3AQ96ST3 1273 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 TUBGCP6Q96RT7 1819 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 RGPD2P0DJD1 1756 aa5.82□□□□□ -1.48
VPS13D-206ENST00000476045 SFI1A8K8P3 1242 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L15C9J2P7 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L10C9JJH3 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L13C9JLJ4 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L12C9JPN9 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L11C9JVI0 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L21D6R901 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L18D6R9N7 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L22D6RA61 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L17D6RBQ6 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L19D6RCP7 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L20D6RJB6 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 GDF11O95390 407 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 APBA3O96018 575 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 RASA1P20936 1047 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 SEC13P55735 322 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 MARSP56192 900 aaKnown RBP5.81□□□□□ -1.48
VPS13D-206ENST00000476045 KCNQ4P56696 695 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 USP17L24Q0WX57 530 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 ARSJQ5FYB0 599 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-206ENST00000476045 ZNF468Q5VIY5 522 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-206ENST00000476045 AIDAQ96BJ3 306 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 C2orf49Q9BVC5 232 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-206ENST00000476045 KLF15Q9UIH9 416 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 PARP3Q9Y6F1 533 aa5.81□□□□□ -1.48
VPS13D-206ENST00000476045 C5P01031 1676 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 ZBTB7CA1YPR0 619 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 DCDC2BA2VCK2 349 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 PHF20L1A8MW92 1017 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 PLSCR1O15162 318 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 IGFBP4P22692 258 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 HMGB2P26583 209 aaKnown RBP5.8□□□□□ -1.48
VPS13D-206ENST00000476045 IRS1P35568 1242 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 TMF1P82094 1093 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 TBCELQ5QJ74 424 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 TMC1Q8TDI8 760 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 EDARADDQ8WWZ3 215 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 TESK2Q96S53 571 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 GGA1Q9UJY5 639 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 TAF1LQ8IZX4 1826 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 FLT4P35916 1363 aa5.8□□□□□ -1.48
VPS13D-206ENST00000476045 CGNL1Q0VF96 1302 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 MAP2P11137 1827 aaKnown RBP5.79□□□□□ -1.48
VPS13D-206ENST00000476045 IL2RBP14784 551 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 CD33P20138 364 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 ADH6P28332 368 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 DGKGP49619 791 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 R3HDM1Q15032 1099 aaKnown RBP5.79□□□□□ -1.48
VPS13D-206ENST00000476045 EZH2Q15910 746 aaKnown RBP5.79□□□□□ -1.48
VPS13D-206ENST00000476045 IER5Q5VY09 327 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 ALYREFQ86V81 257 aaKnown RBP5.79□□□□□ -1.48
VPS13D-206ENST00000476045 FCHSD1Q86WN1 690 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 ANKMY2Q8IV38 441 aa5.79□□□□□ -1.48
VPS13D-206ENST00000476045 COG3Q96JB2 828 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms