RNA–Protein interactions for RNA: ENST00000474647.1

CCDC78-209, Transcript of coiled-coil domain containing 78, humanhuman

TSL 3

Gene CCDC78, Length 506 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-209ENST00000474647 PTPN18Q99952 460 aa17.68■□□□□ 0.42
CCDC78-209ENST00000474647 PUS3Q9BZE2 481 aaKnown RBP17.68■□□□□ 0.42
CCDC78-209ENST00000474647 SRCIN1Q9C0H9 1055 aa17.68■□□□□ 0.42
CCDC78-209ENST00000474647 EFCC1Q9HA90 598 aa17.68■□□□□ 0.42
CCDC78-209ENST00000474647 SPINK5Q9NQ38 1064 aaPredicted RBP17.68■□□□□ 0.42
CCDC78-209ENST00000474647 SERPINA10Q9UK55 444 aa17.68■□□□□ 0.42
CCDC78-209ENST00000474647 IQSEC3Q9UPP2 1182 aaPredicted RBP17.68■□□□□ 0.42
CCDC78-209ENST00000474647 PTPN22Q9Y2R2 807 aa17.68■□□□□ 0.42
CCDC78-209ENST00000474647 MGAMO43451 1857 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 ALDH1L1O75891 902 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 CRKP46108 304 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 TNNI2P48788 182 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 SP3Q02447 781 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 CHAF1AQ13111 956 aaPredicted RBP17.67■□□□□ 0.42
CCDC78-209ENST00000474647 CNKSR2Q8WXI2 1034 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 TMEM39BQ9GZU3 492 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 DOCK2Q92608 1830 aa17.67■□□□□ 0.42
CCDC78-209ENST00000474647 FRAT2O75474 233 aaPredicted RBP17.66■□□□□ 0.42
CCDC78-209ENST00000474647 FAM84BQ96KN1 310 aaPredicted RBP17.66■□□□□ 0.42
CCDC78-209ENST00000474647 CSADQ9Y600 493 aa17.66■□□□□ 0.42
CCDC78-209ENST00000474647 MYH2Q9UKX2 1941 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 CCL15-CCL14A0A0B4J2E2 113 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 TESPA1A2RU30 521 aaPredicted RBP17.65■□□□□ 0.42
CCDC78-209ENST00000474647 VGLL4Q14135 290 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 TAF1CQ15572 869 aaPredicted RBP17.65■□□□□ 0.42
CCDC78-209ENST00000474647 CCL15Q16663 113 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 GCC1Q96CN9 775 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 OTUD5Q96G74 571 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 TEPSINQ96N21 525 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 MROH5Q6ZUA9 1318 aa17.65■□□□□ 0.42
CCDC78-209ENST00000474647 ANP32CO43423 234 aa17.64■□□□□ 0.41
CCDC78-209ENST00000474647 NBPF7P0C2Y1 421 aaPredicted RBP17.64■□□□□ 0.41
CCDC78-209ENST00000474647 CACNB3P54284 484 aa17.64■□□□□ 0.41
CCDC78-209ENST00000474647 CAP1Q01518 475 aa17.64■□□□□ 0.41
CCDC78-209ENST00000474647 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.64■□□□□ 0.41
CCDC78-209ENST00000474647 MS4A4AQ96JQ5 239 aa17.64■□□□□ 0.41
CCDC78-209ENST00000474647 GTF2A2P52657 109 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 GRIK5Q16478 980 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 CAVIN4Q5BKX8 364 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 METTL24Q5JXM2 366 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.63■□□□□ 0.41
CCDC78-209ENST00000474647 BRI3BPQ8WY22 251 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 KAZALD1Q96I82 304 aa17.63■□□□□ 0.41
CCDC78-209ENST00000474647 BICC1Q9H694 974 aaKnown RBP17.63■□□□□ 0.41
CCDC78-209ENST00000474647 EN2P19622 333 aaPredicted RBP17.62■□□□□ 0.41
CCDC78-209ENST00000474647 MAP3K9P80192 1104 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 LRRC24Q50LG9 513 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 TEKT1Q969V4 418 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 ARMC5Q96C12 935 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 ZFYVE28Q9HCC9 887 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 TMOD2Q9NZR1 351 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 RIPOR2Q9Y4F9 1068 aa17.62■□□□□ 0.41
CCDC78-209ENST00000474647 SLC9C1Q4G0N8 1177 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 FAM9BQ8IZU0 186 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 FAM43AQ8N2R8 423 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 TBC1D22AQ8WUA7 517 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 TMEM106CQ9BVX2 250 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 PTCH2Q9Y6C5 1203 aa17.61■□□□□ 0.41
CCDC78-209ENST00000474647 PTPRFP10586 1907 aa17.6■□□□□ 0.41
CCDC78-209ENST00000474647 ZNF316A6NFI3 1004 aaPredicted RBP17.6■□□□□ 0.41
CCDC78-209ENST00000474647 MYCP01106 439 aaPredicted RBP17.6■□□□□ 0.41
CCDC78-209ENST00000474647 ARHGEF6Q15052 776 aa17.6■□□□□ 0.41
CCDC78-209ENST00000474647 FBXO33Q7Z6M2 555 aa17.6■□□□□ 0.41
CCDC78-209ENST00000474647 KLHDC4Q8TBB5 520 aa17.6■□□□□ 0.41
CCDC78-209ENST00000474647 WRNIP1Q96S55 665 aa17.6■□□□□ 0.41
CCDC78-209ENST00000474647 UTYO14607 1347 aa17.59■□□□□ 0.41
CCDC78-209ENST00000474647 WDHD1O75717 1129 aaPredicted RBP17.59■□□□□ 0.41
CCDC78-209ENST00000474647 MAST3O60307 1309 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 SPDYE5A6NIY4 337 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 ECM2O94769 699 aaPredicted RBP17.58■□□□□ 0.4
CCDC78-209ENST00000474647 BCAMP50895 628 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 HDLBPQ00341 1268 aaKnown RBP17.58■□□□□ 0.4
CCDC78-209ENST00000474647 RABL6Q3YEC7 729 aaPredicted RBP17.58■□□□□ 0.4
CCDC78-209ENST00000474647 NBPF11Q86T75 865 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 ANKRD44Q8N8A2 993 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 ZKSCAN4Q969J2 545 aaPredicted RBP17.58■□□□□ 0.4
CCDC78-209ENST00000474647 ZNF333Q96JL9 665 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 SNCAIPQ9Y6H5 919 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 CEP290O15078 2479 aa17.58■□□□□ 0.4
CCDC78-209ENST00000474647 DOCK1Q14185 1865 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 PDE8BO95263 885 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 CETPP11597 493 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 KIF22Q14807 665 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 SLC4A8Q2Y0W8 1093 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 HABP4Q5JVS0 413 aaKnown RBP17.57■□□□□ 0.4
CCDC78-209ENST00000474647 VGLL2Q8N8G2 317 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 ARHGAP39Q9C0H5 1083 aa17.57■□□□□ 0.4
CCDC78-209ENST00000474647 ATAD5Q96QE3 1844 aa17.56■□□□□ 0.4
CCDC78-209ENST00000474647 ERO1BQ86YB8 467 aa17.56■□□□□ 0.4
CCDC78-209ENST00000474647 HOOK2Q96ED9 719 aa17.56■□□□□ 0.4
CCDC78-209ENST00000474647 ZDHHC15Q96MV8 337 aa17.56■□□□□ 0.4
CCDC78-209ENST00000474647 RPAP1Q9BWH6 1393 aaPredicted RBP17.55■□□□□ 0.4
CCDC78-209ENST00000474647 BTBD19C9JJ37 291 aa17.55■□□□□ 0.4
CCDC78-209ENST00000474647 IRF6O14896 467 aa17.55■□□□□ 0.4
CCDC78-209ENST00000474647 IFIT1P09914 478 aaKnown RBP17.55■□□□□ 0.4
CCDC78-209ENST00000474647 SNAPC2Q13487 334 aa17.55■□□□□ 0.4
CCDC78-209ENST00000474647 PUM3Q15397 648 aaKnown RBP17.55■□□□□ 0.4
CCDC78-209ENST00000474647 DCAF15Q66K64 600 aa17.55■□□□□ 0.4
CCDC78-209ENST00000474647 FAM83AQ86UY5 434 aa17.55■□□□□ 0.4
CCDC78-209ENST00000474647 SH3TC2Q8TF17 1288 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms