RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ANGEL1Q9UNK9 670 aaKnown RBP23.19■■□□□ 1.3
COL7A1-209ENST00000474432 REM2Q8IYK8 340 aaPredicted RBP23.18■■□□□ 1.3
COL7A1-209ENST00000474432 TBC1D22AQ8WUA7 517 aa23.18■■□□□ 1.3
COL7A1-209ENST00000474432 SLC5A1P13866 664 aa23.17■■□□□ 1.3
COL7A1-209ENST00000474432 HDLBPQ00341 1268 aaKnown RBP23.17■■□□□ 1.3
COL7A1-209ENST00000474432 HNRNPUQ00839 825 aaKnown RBP eCLIP23.17■■□□□ 1.3
COL7A1-209ENST00000474432 ATF7IPQ6VMQ6 1270 aa23.17■■□□□ 1.3
COL7A1-209ENST00000474432 CDAN1Q8IWY9 1227 aa23.17■■□□□ 1.3
COL7A1-209ENST00000474432 TEPSINQ96N21 525 aa23.17■■□□□ 1.3
COL7A1-209ENST00000474432 LAMB1P07942 1786 aa23.17■■□□□ 1.3
COL7A1-209ENST00000474432 TM4SF4P48230 202 aa23.16■■□□□ 1.3
COL7A1-209ENST00000474432 MTX1Q13505 466 aa23.16■■□□□ 1.3
COL7A1-209ENST00000474432 CLMNQ96JQ2 1002 aa23.16■■□□□ 1.3
COL7A1-209ENST00000474432 MRIQ9BWK5 157 aa23.16■■□□□ 1.3
COL7A1-209ENST00000474432 HDAC5Q9UQL6 1122 aa23.16■■□□□ 1.3
COL7A1-209ENST00000474432 OTOFQ9HC10 1997 aa23.15■■□□□ 1.3
COL7A1-209ENST00000474432 FRAT2O75474 233 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-209ENST00000474432 USP2O75604 605 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-209ENST00000474432 GNAI3P08754 354 aa23.15■■□□□ 1.3
COL7A1-209ENST00000474432 IL15P40933 162 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-209ENST00000474432 ATP2B3Q16720 1220 aa23.15■■□□□ 1.3
COL7A1-209ENST00000474432 SPRYD7Q5W111 196 aa23.15■■□□□ 1.3
COL7A1-209ENST00000474432 CEP126Q9P2H0 1117 aa23.15■■□□□ 1.3
COL7A1-209ENST00000474432 IPO8O15397 1037 aaKnown RBP23.14■■□□□ 1.29
COL7A1-209ENST00000474432 MKRN3Q13064 507 aaKnown RBP23.14■■□□□ 1.29
COL7A1-209ENST00000474432 SUPT20HL1Q3ZLR7 823 aa23.14■■□□□ 1.29
COL7A1-209ENST00000474432 FRAT1Q92837 279 aaPredicted RBP23.14■■□□□ 1.29
COL7A1-209ENST00000474432 MCOLN1Q9GZU1 580 aa23.14■■□□□ 1.29
COL7A1-209ENST00000474432 SUGT1Q9Y2Z0 365 aa23.14■■□□□ 1.29
COL7A1-209ENST00000474432 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.14■■□□□ 1.29
COL7A1-209ENST00000474432 APOBEC3HQ6NTF7 200 aaKnown RBP23.13■■□□□ 1.29
COL7A1-209ENST00000474432 CLUAP1Q96AJ1 413 aa23.13■■□□□ 1.29
COL7A1-209ENST00000474432 ZDHHC15Q96MV8 337 aa23.13■■□□□ 1.29
COL7A1-209ENST00000474432 TCP10L2B9ZVM9 353 aa23.12■■□□□ 1.29
COL7A1-209ENST00000474432 ZBTB22O15209 634 aa23.12■■□□□ 1.29
COL7A1-209ENST00000474432 PPP1R12BO60237 982 aaPredicted RBP23.12■■□□□ 1.29
COL7A1-209ENST00000474432 TEKT1Q969V4 418 aa23.12■■□□□ 1.29
COL7A1-209ENST00000474432 SRGAP3O43295 1099 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 ADORA1P30542 326 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 PHKA1P46020 1223 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 CACNB3P54284 484 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 TNFAIP1Q13829 316 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 TMEM39BQ9GZU3 492 aa23.11■■□□□ 1.29
COL7A1-209ENST00000474432 UNCXA6NJT0 531 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 GJA5P36382 358 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 HHIPL2Q6UWX4 724 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 TMEM57Q8N5G2 664 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 WDR66Q8TBY9 1149 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 SLC10A4Q96EP9 437 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 WNK4Q96J92 1243 aa23.1■■□□□ 1.29
COL7A1-209ENST00000474432 TBC1D8O95759 1140 aa23.09■■□□□ 1.29
COL7A1-209ENST00000474432 TIMM10P62072 90 aa23.09■■□□□ 1.29
COL7A1-209ENST00000474432 DGKZQ13574 1117 aa23.09■■□□□ 1.29
COL7A1-209ENST00000474432 PNMA6EA0A0J9YXQ4 647 aa23.08■■□□□ 1.29
COL7A1-209ENST00000474432 PRDX5P30044 214 aa23.08■■□□□ 1.29
COL7A1-209ENST00000474432 ZKSCAN2Q63HK3 967 aa23.08■■□□□ 1.29
COL7A1-209ENST00000474432 R3HDMLQ9H3Y0 253 aa23.08■■□□□ 1.29
COL7A1-209ENST00000474432 MAST3O60307 1309 aa23.08■■□□□ 1.28
COL7A1-209ENST00000474432 SALL1Q9NSC2 1324 aa23.08■■□□□ 1.28
COL7A1-209ENST00000474432 GNAI2P04899 355 aa23.07■■□□□ 1.28
COL7A1-209ENST00000474432 IREB2P48200 963 aaKnown RBP23.07■■□□□ 1.28
COL7A1-209ENST00000474432 TFCP2Q12800 502 aa23.07■■□□□ 1.28
COL7A1-209ENST00000474432 CCDC102BQ68D86 513 aa23.07■■□□□ 1.28
COL7A1-209ENST00000474432 CFHR5Q9BXR6 569 aa23.07■■□□□ 1.28
COL7A1-209ENST00000474432 SEMA3EO15041 775 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 ZBTB48P10074 688 aaPredicted RBP23.06■■□□□ 1.28
COL7A1-209ENST00000474432 SREBF2Q12772 1141 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 DIXDC1Q155Q3 683 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 FKBP1CQ5VVH2 108 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.06■■□□□ 1.28
COL7A1-209ENST00000474432 ANKRD13AQ8IZ07 590 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 DAGLAQ9Y4D2 1042 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 ZBED9Q6R2W3 1325 aa23.06■■□□□ 1.28
COL7A1-209ENST00000474432 A0A1B0GUL7 405 aa23.05■■□□□ 1.28
COL7A1-209ENST00000474432 RLBP1P12271 317 aa23.05■■□□□ 1.28
COL7A1-209ENST00000474432 TNNI2P48788 182 aa23.05■■□□□ 1.28
COL7A1-209ENST00000474432 FAM83AQ86UY5 434 aa23.05■■□□□ 1.28
COL7A1-209ENST00000474432 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.05■■□□□ 1.28
COL7A1-209ENST00000474432 MANSC4A6NHS7 340 aaPredicted RBP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 IGF2BP3O00425 579 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 RASGRF1Q13972 1273 aa23.04■■□□□ 1.28
COL7A1-209ENST00000474432 NOM1Q5C9Z4 860 aaKnown RBP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 ZNF296Q8WUU4 475 aaPredicted RBP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 GNL3LQ9NVN8 582 aaKnown RBP23.04■■□□□ 1.28
COL7A1-209ENST00000474432 DENND2AQ9ULE3 1009 aa23.04■■□□□ 1.28
COL7A1-209ENST00000474432 CCDC85CA6NKD9 419 aa23.03■■□□□ 1.28
COL7A1-209ENST00000474432 CDC42EP5Q6NZY7 148 aa23.03■■□□□ 1.28
COL7A1-209ENST00000474432 XAGE2Q96GT9 111 aa23.03■■□□□ 1.28
COL7A1-209ENST00000474432 MYH2Q9UKX2 1941 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 GPR25O00155 361 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 INHBEP58166 350 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 POLA2Q14181 598 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 IFNL1Q8IU54 200 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 CNKSR2Q8WXI2 1034 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 ELP3Q9H9T3 547 aa23.02■■□□□ 1.28
COL7A1-209ENST00000474432 PDS5AQ29RF7 1337 aaKnown RBP23.02■■□□□ 1.28
COL7A1-209ENST00000474432 RPAP1Q9BWH6 1393 aaPredicted RBP23.01■■□□□ 1.27
COL7A1-209ENST00000474432 TESPA1A2RU30 521 aaPredicted RBP23.01■■□□□ 1.27
COL7A1-209ENST00000474432 LDHBP07195 334 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms