RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 CRKP46108 304 aa13.85□□□□□ -0.19
SEMA4D-216ENST00000474258 CHAF1AQ13111 956 aaPredicted RBP13.85□□□□□ -0.19
SEMA4D-216ENST00000474258 NOM1Q5C9Z4 860 aaKnown RBP13.85□□□□□ -0.19
SEMA4D-216ENST00000474258 TDRD3Q9H7E2 651 aaKnown RBP13.85□□□□□ -0.19
SEMA4D-216ENST00000474258 GPR25O00155 361 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 USP2O75604 605 aaPredicted RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 ALDH1A1P00352 501 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 ZBTB48P10074 688 aaPredicted RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 BCAMP50895 628 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 HDLBPQ00341 1268 aaKnown RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 PUM3Q15397 648 aaKnown RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 PKN2Q16513 984 aaKnown RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 ZNF296Q8WUU4 475 aaPredicted RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 WNK4Q96J92 1243 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 CLMNQ96JQ2 1002 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 CFHR5Q9BXR6 569 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 KIF16BQ96L93 1317 aa13.84□□□□□ -0.19
SEMA4D-216ENST00000474258 EYA2O00167 538 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 UBTFL1P0CB47 393 aaPredicted RBP13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 SLC5A1P13866 664 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 FGFR2P21802 821 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 RFX5P48382 616 aaPredicted RBP13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 TNNI2P48788 182 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 ANKRD13AQ8IZ07 590 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 MRIQ9BWK5 157 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 NOB1Q9ULX3 412 aaKnown RBP13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 HDAC5Q9UQL6 1122 aa13.83□□□□□ -0.2
SEMA4D-216ENST00000474258 TCP10L2B9ZVM9 353 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 HNRNPUQ00839 825 aaKnown RBP eCLIP13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 GRIK5Q16478 980 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 IFNL1Q8IU54 200 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 LPIN2Q92539 896 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 TEKT1Q969V4 418 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 API5Q9BZZ5 524 aaKnown RBP13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 SUGT1Q9Y2Z0 365 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 MAST3O60307 1309 aa13.82□□□□□ -0.2
SEMA4D-216ENST00000474258 FKTNO75072 461 aa13.81□□□□□ -0.2
SEMA4D-216ENST00000474258 OTUD7BQ6GQQ9 843 aa13.81□□□□□ -0.2
SEMA4D-216ENST00000474258 TEPSINQ96N21 525 aa13.81□□□□□ -0.2
SEMA4D-216ENST00000474258 MYH2Q9UKX2 1941 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 CIAO1O76071 339 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 ATG9AQ7Z3C6 839 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 WDR66Q8TBY9 1149 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 ZDHHC15Q96MV8 337 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 TMEM39BQ9GZU3 492 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 R3HDMLQ9H3Y0 253 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 TMOD2Q9NZR1 351 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 CEP126Q9P2H0 1117 aa13.8□□□□□ -0.2
SEMA4D-216ENST00000474258 GJA5P36382 358 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 HHIPL2Q6UWX4 724 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 ARHGAP45Q92619 1136 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 SIL1Q9H173 461 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 ELP3Q9H9T3 547 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 HPS5Q9UPZ3 1129 aa13.79□□□□□ -0.2
SEMA4D-216ENST00000474258 TESPA1A2RU30 521 aaPredicted RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 IGF2BP3O00425 579 aaKnown RBP eCLIP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 RARSP54136 660 aaKnown RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 MAP3K9P80192 1104 aa13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 FBXO46Q6PJ61 603 aaPredicted RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 FAM83AQ86UY5 434 aa13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 CDAN1Q8IWY9 1227 aa13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 OPTNQ96CV9 577 aa13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 GNL3LQ9NVN8 582 aaKnown RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 LRRFIP2Q9Y608 721 aaKnown RBP13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 ZBED9Q6R2W3 1325 aa13.78□□□□□ -0.2
SEMA4D-216ENST00000474258 IL15P40933 162 aaPredicted RBP13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 CACNB3P54284 484 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 SOX10P56693 466 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 ATP2B3Q16720 1220 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 FKBP1CQ5VVH2 108 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 APOBEC3HQ6NTF7 200 aaKnown RBP13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 HOOK2Q96ED9 719 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 CSADQ9Y600 493 aa13.77□□□□□ -0.21
SEMA4D-216ENST00000474258 VGLL4Q14135 290 aa13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 INTS3Q68E01 1043 aaKnown RBP13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 MS4A4AQ96JQ5 239 aa13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 MEIS3Q99687 375 aa13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 PTPN18Q99952 460 aa13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 COPRSQ9NQ92 184 aa13.76□□□□□ -0.21
SEMA4D-216ENST00000474258 IPO8O15397 1037 aaKnown RBP13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 GNAI3P08754 354 aa13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 GTF2A2P52657 109 aa13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 CRHR2Q13324 411 aa13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 DENND2AQ9ULE3 1009 aa13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 PA2G4Q9UQ80 394 aaKnown RBP13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 TRIM17Q9Y577 477 aa13.75□□□□□ -0.21
SEMA4D-216ENST00000474258 PDE4DIPQ5VU43 2346 aa13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 SEMA3EO15041 775 aa13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 LDHBP07195 334 aaKnown RBP13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 DCAF15Q66K64 600 aa13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 CNKSR2Q8WXI2 1034 aa13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 ERO1AQ96HE7 468 aa13.74□□□□□ -0.21
SEMA4D-216ENST00000474258 RPAP1Q9BWH6 1393 aaPredicted RBP13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 SALL1Q9NSC2 1324 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 ZBTB22O15209 634 aa13.73□□□□□ -0.21
SEMA4D-216ENST00000474258 PRDX5P30044 214 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms