RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 SPDYE2Q495Y8 402 aa14.83□□□□□ -0.04
SYNE1-221ENST00000472563 TEKT1Q969V4 418 aa14.83□□□□□ -0.04
SYNE1-221ENST00000472563 TDRD3Q9H7E2 651 aaKnown RBP14.83□□□□□ -0.04
SYNE1-221ENST00000472563 VEZTQ9HBM0 779 aa14.83□□□□□ -0.04
SYNE1-221ENST00000472563 ZNF70Q9UC06 446 aaPredicted RBP14.83□□□□□ -0.04
SYNE1-221ENST00000472563 MAST3O60307 1309 aa14.83□□□□□ -0.04
SYNE1-221ENST00000472563 ZNF646O15015 1829 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-221ENST00000472563 TIMM10P62072 90 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 ATP8B2P98198 1209 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 TNFAIP1Q13829 316 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 RASA3Q14644 834 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 SUPT20HL1Q3ZLR7 823 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 LDLRAD1Q5T700 205 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 ARMC9Q7Z3E5 817 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 RASAL3Q86YV0 1011 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 ITPRIPQ8IWB1 547 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 REM2Q8IYK8 340 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-221ENST00000472563 TNS4Q8IZW8 715 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 DENND2AQ9ULE3 1009 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 TRPM7Q96QT4 1865 aa14.82□□□□□ -0.04
SYNE1-221ENST00000472563 THSD7BQ9C0I4 1608 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 A0A1B0GUL6 1792 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 MS4A1P11836 297 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 ADORA1P30542 326 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 PHKA1P46020 1223 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 G3BP1Q13283 466 aaKnown RBP eCLIP14.81□□□□□ -0.04
SYNE1-221ENST00000472563 POLA2Q14181 598 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 MAP3K11Q16584 847 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 CCDC102BQ68D86 513 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 HHIPL2Q6UWX4 724 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 SSH3Q8TE77 659 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 ZDHHC15Q96MV8 337 aa14.81□□□□□ -0.04
SYNE1-221ENST00000472563 A0A1B0GUL7 405 aa14.8□□□□□ -0.04
SYNE1-221ENST00000472563 PPP1R12BO60237 982 aaPredicted RBP14.8□□□□□ -0.04
SYNE1-221ENST00000472563 MVPQ14764 893 aaKnown RBP14.8□□□□□ -0.04
SYNE1-221ENST00000472563 APOBEC3HQ6NTF7 200 aaKnown RBP14.8□□□□□ -0.04
SYNE1-221ENST00000472563 ANGEL1Q9UNK9 670 aaKnown RBP14.8□□□□□ -0.04
SYNE1-221ENST00000472563 SALL1Q9NSC2 1324 aa14.8□□□□□ -0.04
SYNE1-221ENST00000472563 UNCXA6NJT0 531 aa14.79□□□□□ -0.04
SYNE1-221ENST00000472563 PRKG1Q13976 671 aa14.79□□□□□ -0.04
SYNE1-221ENST00000472563 PDS5AQ29RF7 1337 aaKnown RBP14.79□□□□□ -0.04
SYNE1-221ENST00000472563 NBPF12Q5TAG4 269 aaPredicted RBP14.79□□□□□ -0.04
SYNE1-221ENST00000472563 PANK1Q8TE04 598 aa14.79□□□□□ -0.04
SYNE1-221ENST00000472563 XAGE2Q96GT9 111 aa14.79□□□□□ -0.04
SYNE1-221ENST00000472563 CSRNP1Q96S65 589 aa14.79□□□□□ -0.04
SYNE1-221ENST00000472563 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.79□□□□□ -0.04
SYNE1-221ENST00000472563 PAPPA2Q9BXP8 1791 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 TCP10L2B9ZVM9 353 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 LDHBP07195 334 aaKnown RBP14.78□□□□□ -0.04
SYNE1-221ENST00000472563 TNNI2P48788 182 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 RASGRF1Q13972 1273 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 FKBP1CQ5VVH2 108 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 TEPSINQ96N21 525 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 NEUROD6Q96NK8 337 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 C1orf115Q9H7X2 142 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 SAGE1Q9NXZ1 904 aa14.78□□□□□ -0.04
SYNE1-221ENST00000472563 PRDX5P30044 214 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.05
SYNE1-221ENST00000472563 GPR108Q9NPR9 543 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 TMOD2Q9NZR1 351 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 TSKSQ9UJT2 592 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 RCAN3Q9UKA8 241 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 NOP58Q9Y2X3 529 aaKnown RBP14.77□□□□□ -0.05
SYNE1-221ENST00000472563 SSC5DA1L4H1 1573 aa14.77□□□□□ -0.05
SYNE1-221ENST00000472563 USP2O75604 605 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-221ENST00000472563 SURF6O75683 361 aaKnown RBP14.76□□□□□ -0.05
SYNE1-221ENST00000472563 IREB2P48200 963 aaKnown RBP14.76□□□□□ -0.05
SYNE1-221ENST00000472563 GORABQ5T7V8 394 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 FAM83AQ86UY5 434 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 TMEM39BQ9GZU3 492 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 RNF186Q9NXI6 227 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 FZD1Q9UP38 647 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 DAGLAQ9Y4D2 1042 aa14.76□□□□□ -0.05
SYNE1-221ENST00000472563 TM4SF4P48230 202 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 CACNB3P54284 484 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 OS9Q13438 667 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-221ENST00000472563 DIXDC1Q155Q3 683 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 SPRYD7Q5W111 196 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 SPTY2D1Q68D10 685 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-221ENST00000472563 CEP85Q6P2H3 762 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 SLC10A4Q96EP9 437 aa14.75□□□□□ -0.05
SYNE1-221ENST00000472563 TRPA1O75762 1119 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 ARID4AP29374 1257 aaPredicted RBP14.74□□□□□ -0.05
SYNE1-221ENST00000472563 TNNI3KQ59H18 835 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 CDC42EP5Q6NZY7 148 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 CDAN1Q8IWY9 1227 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 ANKRD13AQ8IZ07 590 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 FAM163AQ96GL9 167 aaPredicted RBP14.74□□□□□ -0.05
SYNE1-221ENST00000472563 HMG20BQ9P0W2 317 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 FPGT-TNNI3KV9GXZ4 949 aa14.74□□□□□ -0.05
SYNE1-221ENST00000472563 POLR2AP24928 1970 aaKnown RBP14.73□□□□□ -0.05
SYNE1-221ENST00000472563 UQCRFS1P1P0C7P4 283 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 ZBTB48P10074 688 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-221ENST00000472563 SREBF2Q12772 1141 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 SLF2Q8IX21 1173 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 SPATA5Q8NB90 893 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 HOOK2Q96ED9 719 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 CLMNQ96JQ2 1002 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 ABCF2Q9UG63 623 aa14.73□□□□□ -0.05
SYNE1-221ENST00000472563 DDX19BQ9UMR2 479 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms