RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 PCDHB15Q9Y5E8 787 aa17.41■□□□□ 0.38
BRCA1-211ENST00000472490 U3KPZ7 1027 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-211ENST00000472490 PASKQ96RG2 1323 aa17.41■□□□□ 0.38
BRCA1-211ENST00000472490 NBPF9Q3BBW0 867 aa17.4■□□□□ 0.38
BRCA1-211ENST00000472490 ANGEL2Q5VTE6 544 aaKnown RBP17.4■□□□□ 0.38
BRCA1-211ENST00000472490 CCDC8Q9H0W5 538 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-211ENST00000472490 DBNLQ9UJU6 430 aaKnown RBP17.4■□□□□ 0.38
BRCA1-211ENST00000472490 SPDYE2BA6NHP3 402 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 SPDYE6P0CI01 402 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 CRKP46108 304 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 APOBEC3FQ8IUX4 373 aaKnown RBP17.39■□□□□ 0.37
BRCA1-211ENST00000472490 SLF2Q8IX21 1173 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 HMG20BQ9P0W2 317 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 ABCF2Q9UG63 623 aa17.39■□□□□ 0.37
BRCA1-211ENST00000472490 TMEM88BA6NKF7 163 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 IGSF3O75054 1194 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 HDAC1Q13547 482 aaPredicted RBP17.38■□□□□ 0.37
BRCA1-211ENST00000472490 HHIPL2Q6UWX4 724 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 USP48Q86UV5 1035 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 ZBED3Q96IU2 234 aaPredicted RBP17.38■□□□□ 0.37
BRCA1-211ENST00000472490 GLIS2Q9BZE0 524 aaPredicted RBP17.38■□□□□ 0.37
BRCA1-211ENST00000472490 CREBZFQ9NS37 354 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 ZBTB47Q9UFB7 747 aaPredicted RBP17.38■□□□□ 0.37
BRCA1-211ENST00000472490 ARAP2Q8WZ64 1704 aa17.38■□□□□ 0.37
BRCA1-211ENST00000472490 COL1A1P02452 1464 aaPredicted RBP17.37■□□□□ 0.37
BRCA1-211ENST00000472490 PRDX5P30044 214 aa17.37■□□□□ 0.37
BRCA1-211ENST00000472490 MCAMP43121 646 aa17.37■□□□□ 0.37
BRCA1-211ENST00000472490 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
BRCA1-211ENST00000472490 DZIP1Q86YF9 867 aaKnown RBP17.37■□□□□ 0.37
BRCA1-211ENST00000472490 ZDHHC15Q96MV8 337 aa17.37■□□□□ 0.37
BRCA1-211ENST00000472490 TNFAIP1Q13829 316 aa17.36■□□□□ 0.37
BRCA1-211ENST00000472490 EXOC6Q8TAG9 804 aa17.36■□□□□ 0.37
BRCA1-211ENST00000472490 GCC1Q96CN9 775 aa17.36■□□□□ 0.37
BRCA1-211ENST00000472490 PRMT6Q96LA8 375 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-211ENST00000472490 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
BRCA1-211ENST00000472490 RWDD1Q9H446 243 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-211ENST00000472490 TLR7Q9NYK1 1049 aaKnown RBP17.36■□□□□ 0.37
BRCA1-211ENST00000472490 ASTN2O75129 1339 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-211ENST00000472490 TRAF5O00463 557 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 GSTO1P78417 241 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 GRIK5Q16478 980 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 TMOD2Q9NZR1 351 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 LRP2BPQ9P2M1 347 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 PPP2R3BQ9Y5P8 575 aa17.35■□□□□ 0.37
BRCA1-211ENST00000472490 ZNF646O15015 1829 aaPredicted RBP17.35■□□□□ 0.37
BRCA1-211ENST00000472490 ADM5C9JUS6 153 aa17.34■□□□□ 0.37
BRCA1-211ENST00000472490 CELF2O95319 508 aaKnown RBP17.34■□□□□ 0.37
BRCA1-211ENST00000472490 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.34■□□□□ 0.37
BRCA1-211ENST00000472490 GPATCH3Q96I76 525 aa17.34■□□□□ 0.37
BRCA1-211ENST00000472490 CLRN2A0PK11 232 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 LDHCP07864 332 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 NF2P35240 595 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 TNNI2P48788 182 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 SPDYE2Q495Y8 402 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 PI16Q6UXB8 463 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 TDRD3Q9H7E2 651 aaKnown RBP17.33■□□□□ 0.36
BRCA1-211ENST00000472490 ZNF408Q9H9D4 720 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 VEZTQ9HBM0 779 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 RAI14Q9P0K7 980 aa17.33■□□□□ 0.36
BRCA1-211ENST00000472490 ZAP70P43403 619 aa17.32■□□□□ 0.36
BRCA1-211ENST00000472490 TTF1Q15361 905 aaPredicted RBP17.32■□□□□ 0.36
BRCA1-211ENST00000472490 CDCA5Q96FF9 252 aa17.32■□□□□ 0.36
BRCA1-211ENST00000472490 FAM163AQ96GL9 167 aaPredicted RBP17.32■□□□□ 0.36
BRCA1-211ENST00000472490 DEFB129Q9H1M3 183 aa17.32■□□□□ 0.36
BRCA1-211ENST00000472490 SNRKQ9NRH2 765 aa17.32■□□□□ 0.36
BRCA1-211ENST00000472490 ZNF70Q9UC06 446 aaPredicted RBP17.32■□□□□ 0.36
BRCA1-211ENST00000472490 ABT1Q9ULW3 272 aaKnown RBP17.32■□□□□ 0.36
BRCA1-211ENST00000472490 PCDHAC2Q9Y5I4 1007 aa17.32■□□□□ 0.36
BRCA1-211ENST00000472490 SMARCA5O60264 1052 aaPredicted RBP17.31■□□□□ 0.36
BRCA1-211ENST00000472490 CYP2E1P05181 493 aaPredicted RBP17.31■□□□□ 0.36
BRCA1-211ENST00000472490 MECOMQ03112 1051 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 DIXDC1Q155Q3 683 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 CST9Q5W186 159 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 APOBEC3HQ6NTF7 200 aaKnown RBP17.31■□□□□ 0.36
BRCA1-211ENST00000472490 TMED8Q6PL24 325 aaPredicted RBP17.31■□□□□ 0.36
BRCA1-211ENST00000472490 TBC1D9Q6ZT07 1266 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 C2orf69Q8N8R5 385 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 DAGLAQ9Y4D2 1042 aa17.31■□□□□ 0.36
BRCA1-211ENST00000472490 ATP5JP18859 108 aa17.3■□□□□ 0.36
BRCA1-211ENST00000472490 FKBP1BP68106 108 aa17.3■□□□□ 0.36
BRCA1-211ENST00000472490 FKBP1CQ5VVH2 108 aa17.3■□□□□ 0.36
BRCA1-211ENST00000472490 NOL10Q9BSC4 688 aaKnown RBP17.3■□□□□ 0.36
BRCA1-211ENST00000472490 ECHDC1Q9NTX5 307 aa17.3■□□□□ 0.36
BRCA1-211ENST00000472490 MROH7-TTC4A0A0A0MT08 1334 aa17.29■□□□□ 0.36
BRCA1-211ENST00000472490 GAKO14976 1311 aa17.29■□□□□ 0.36
BRCA1-211ENST00000472490 FMR1Q06787 632 aaKnown RBP eCLIP17.29■□□□□ 0.36
BRCA1-211ENST00000472490 MAP3K12Q12852 859 aa17.29■□□□□ 0.36
BRCA1-211ENST00000472490 SUPT20HL1Q3ZLR7 823 aa17.29■□□□□ 0.36
BRCA1-211ENST00000472490 ANKRD45Q5TZF3 282 aa17.29■□□□□ 0.36
BRCA1-211ENST00000472490 NSUN4Q96CB9 384 aaKnown RBP17.29■□□□□ 0.36
BRCA1-211ENST00000472490 GBA2Q9HCG7 927 aaPredicted RBP17.29■□□□□ 0.36
BRCA1-211ENST00000472490 IDH1O75874 414 aaKnown RBP17.28■□□□□ 0.36
BRCA1-211ENST00000472490 MAP4K4O95819 1239 aaPredicted RBP17.28■□□□□ 0.36
BRCA1-211ENST00000472490 CENPBP07199 599 aaPredicted RBP17.28■□□□□ 0.36
BRCA1-211ENST00000472490 IRX6P78412 446 aaPredicted RBP17.28■□□□□ 0.36
BRCA1-211ENST00000472490 HTRA3P83110 453 aa17.28■□□□□ 0.36
BRCA1-211ENST00000472490 RASA3Q14644 834 aa17.28■□□□□ 0.36
BRCA1-211ENST00000472490 NAA16Q6N069 864 aaPredicted RBP17.28■□□□□ 0.36
BRCA1-211ENST00000472490 FAM83AQ86UY5 434 aa17.28■□□□□ 0.36
BRCA1-211ENST00000472490 TLL2Q9Y6L7 1015 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms