RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	PIK3R2	O00459	728 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	PAGE1	O75459	146 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	ARNT	P27540	789 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	ZNF157	P51786	506 aa	Predicted RBP	6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	ZNF394	Q53GI3	561 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	PCNX4	Q63HM2	1172 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	TTBK2	Q6IQ55	1244 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	PHC3	Q8NDX5	983 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	DCAF11	Q8TEB1	546 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	TRIM11	Q96F44	468 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	RHOV	Q96L33	236 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	EMILIN2	Q9BXX0	1053 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	COPRS	Q9NQ92	184 aa		6.22	□□□□□ -1.41
PTCD3-209	ENST00000472044	GNB5	O14775	395 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	CYP11A1	P05108	521 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	SNRPN	P63162	240 aa	Known RBP	6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	LMNB2	Q03252	620 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	ZNF252P-AS1	Q0IIN9	211 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	SUZ12	Q15022	739 aa	Known RBP	6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	LRRC14	Q15048	493 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	TRAPPC3L	Q5T215	181 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	HGSNAT	Q68CP4	663 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	TXNDC11	Q6PKC3	985 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	PDZD3	Q86UT5	571 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	SULF2	Q8IWU5	870 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	ZSCAN1	Q8NBB4	408 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	SLC7A3	Q8WY07	619 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	KLHDC7B	Q96G42	594 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	RRAGC	Q9HB90	399 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	CACNA2D2	Q9NY47	1150 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044	MKL2	Q9ULH7	1088 aa		6.21	□□□□□ -1.42
PTCD3-209	ENST00000472044		A0A0A0MRY4	1105 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	SPDYE3	A6NKU9	549 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	DEAF1	O75398	565 aa	Predicted RBP	6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	CDC25B	P30305	580 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	GBP2	P32456	591 aa	Predicted RBP	6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	EIF4A3	P38919	411 aa	Known RBP	6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	GSTM4	Q03013	218 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	CCDC84	Q86UT8	332 aa	Predicted RBP	6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	FBXO11	Q86XK2	927 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	TRIM42	Q8IWZ5	723 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	GALNT11	Q8NCW6	608 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	STK35	Q8TDR2	534 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	CCSER2	Q9H7U1	834 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	PCDHGB7	Q9Y5F8	929 aa		6.2	□□□□□ -1.42
PTCD3-209	ENST00000472044	GSTP1	P09211	210 aa	Known RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	TFE3	P19532	575 aa	Predicted RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	GART	P22102	1010 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	CD68	P34810	354 aa	Predicted RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	INSM1	Q01101	510 aa	Predicted RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	CAMK2G	Q13555	558 aa	Predicted RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	MAP3K11	Q16584	847 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	RASIP1	Q5U651	963 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	FMR1NB	Q8N0W7	255 aa	Predicted RBP	6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	SLC43A3	Q8NBI5	491 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	TINF2	Q9BSI4	451 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	PLVAP	Q9BX97	442 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	ACBD3	Q9H3P7	528 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	KRT82	Q9NSB4	513 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	ADAMTS1	Q9UHI8	967 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	TLR6	Q9Y2C9	796 aa		6.19	□□□□□ -1.42
PTCD3-209	ENST00000472044	MINDY4B	A8MYZ0	360 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	DLL1	O00548	723 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	GREM1	O60565	184 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	TRIM37	O94972	964 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	PF4	P02776	101 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	GJA8	P48165	433 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	RAC1	P63000	192 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	POU4F3	Q15319	338 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	LLGL2	Q6P1M3	1020 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	FBXL19	Q6PCT2	694 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	BEND7	Q8N7W2	519 aa	Predicted RBP	6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	CARD10	Q9BWT7	1032 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	NOP53	Q9NZM5	478 aa	Known RBP	6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	ADAMTS8	Q9UP79	889 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	ROBO2	Q9HCK4	1378 aa		6.18	□□□□□ -1.42
PTCD3-209	ENST00000472044	ADAM11	O75078	769 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	TRIM28	Q13263	835 aa	Known RBP	6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	NAALADL2	Q58DX5	795 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	FOXD4L3	Q6VB84	417 aa	Predicted RBP	6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	KIAA0825	Q8IV33	1275 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	RASGRP4	Q8TDF6	673 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	ZNF296	Q8WUU4	475 aa	Predicted RBP	6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	CORO1B	Q9BR76	489 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	SPON2	Q9BUD6	331 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	NT5C1A	Q9BXI3	368 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	SUPT16H	Q9Y5B9	1047 aa	Known RBP	6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	SYNGAP1	Q96PV0	1343 aa		6.17	□□□□□ -1.42
PTCD3-209	ENST00000472044	LOC100289279	A0A1B0GTE1	492 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044		F6X3S4	739 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	ELN	P15502	786 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	MAOB	P27338	520 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	GNL2	Q13823	731 aa	Known RBP	6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	IGF2-AS	Q6U949	168 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	PODN	Q7Z5L7	613 aa		6.16	□□□□□ -1.42
PTCD3-209	ENST00000472044	GRIN3A	Q8TCU5	1115 aa		6.16	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms