RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 RTCBQ9Y3I0 505 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 RIPOR2Q9Y4F9 1068 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 NCOA3Q9Y6Q9 1424 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 CHD2O14647 1828 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 ZBTB43O43298 467 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 IARSP41252 1262 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 TBC1D9BQ66K14 1250 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 ZSCAN30Q86W11 494 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 DZIP1Q86YF9 867 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 ZNF165P49910 485 aa16.02■□□□□ 0.16
CCDC88A-211ENST00000471947 NAA16Q6N069 864 aaPredicted RBP16.02■□□□□ 0.16
CCDC88A-211ENST00000471947 NSUN7Q8NE18 718 aaKnown RBP16.02■□□□□ 0.16
CCDC88A-211ENST00000471947 PES1O00541 588 aaKnown RBP16.02■□□□□ 0.15
CCDC88A-211ENST00000471947 HMGB1P09429 215 aaKnown RBP16.02■□□□□ 0.15
CCDC88A-211ENST00000471947 FAM196AQ6ZSG2 479 aa16.02■□□□□ 0.15
CCDC88A-211ENST00000471947 CFAP45Q9UL16 551 aa16.02■□□□□ 0.15
CCDC88A-211ENST00000471947 SMC2O95347 1197 aa16.02■□□□□ 0.15
CCDC88A-211ENST00000471947 USP5P45974 858 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 ZNF445P59923 1031 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 SART3Q15020 963 aaKnown RBP16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 ZBTB9Q96C00 473 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 TYRO3Q06418 890 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 CYB5R4Q7L1T6 521 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 NKX2-3Q8TAU0 364 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 STX8Q9UNK0 236 aa16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 ZNF396Q96N95 335 aaPredicted RBP16.01■□□□□ 0.15
CCDC88A-211ENST00000471947 TRIM37O94972 964 aa16■□□□□ 0.15
CCDC88A-211ENST00000471947 ZFYP08048 801 aaPredicted RBP16■□□□□ 0.15
CCDC88A-211ENST00000471947 IFNL3Q8IZI9 196 aa16■□□□□ 0.15
CCDC88A-211ENST00000471947 UQCRFS1P1P0C7P4 283 aa16■□□□□ 0.15
CCDC88A-211ENST00000471947 LINC00116Q8NCU8 138 aa16■□□□□ 0.15
CCDC88A-211ENST00000471947 CLIC4Q9Y696 253 aa16■□□□□ 0.15
CCDC88A-211ENST00000471947 EIF6P56537 245 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 EVX2Q03828 476 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 TTF1Q15361 905 aaPredicted RBP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 SAFBQ15424 915 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 DSCC1Q9BVC3 393 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 USP42Q9H9J4 1324 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 MAGEB6P1A0A0J9YX57 407 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 PICALMQ13492 652 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 WTAPQ15007 396 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 KLHL10Q6JEL2 608 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 INTS5Q6P9B9 1019 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 HOMER1Q86YM7 354 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 STAMQ92783 540 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 CLIC6Q96NY7 704 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 ADD2P35612 726 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 NKX1-1Q15270 411 aaPredicted RBP15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 DIXDC1Q155Q3 683 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 MCM9Q9NXL9 1143 aa15.99■□□□□ 0.15
CCDC88A-211ENST00000471947 USP17L12C9JPN9 530 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 USP17L21D6R901 530 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 HMGN5P82970 282 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 DHX8Q14562 1220 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 CPDO75976 1380 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 PXDNLA1KZ92 1463 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 PRDX5P30044 214 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 EIF5P55010 431 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 PGBD1Q96JS3 809 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 TRMT1Q9NXH9 659 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 ZSWIM5Q9P217 1185 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 RGPD1P0DJD0 1748 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 NMT2O60551 498 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 TPTE2Q6XPS3 522 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 CCDC39Q9UFE4 941 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 MED23Q9ULK4 1368 aa15.98■□□□□ 0.15
CCDC88A-211ENST00000471947 RBM5P52756 815 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 RPS8P62241 208 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 TRIM22Q8IYM9 498 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 RPGRQ92834 1020 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 TMX1Q9H3N1 280 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 NEDD4P46934 1319 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 TSPY2A6NKD2 308 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 CYP2D6P10635 497 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 FAM177A1Q8N128 213 aaPredicted RBP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 ANGEL1Q9UNK9 670 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 CIAO1O76071 339 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 PLIN2Q99541 437 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 MKNK2Q9HBH9 465 aa15.97■□□□□ 0.15
CCDC88A-211ENST00000471947 COBLO75128 1261 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 CTDNEP1O95476 244 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 SPATA31A1Q5TZJ5 1347 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 PTGS1P23219 599 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 NOL10Q9BSC4 688 aaKnown RBP15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 CPVLQ9H3G5 476 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 PFKFB2O60825 505 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 CCDC186Q7Z3E2 898 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 NRBP1Q9UHY1 535 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 MRVI1Q9Y6F6 885 aa15.96■□□□□ 0.15
CCDC88A-211ENST00000471947 CAMTA2O94983 1202 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 SSRP1Q08945 709 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 TRAPPC3LQ5T215 181 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 TXNRD3Q86VQ6 643 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 SMARCC1Q92922 1105 aaPredicted RBP15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 VPS54Q9P1Q0 977 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 BTBD18B2RXH4 712 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 CDC27P30260 824 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 LRMPQ12912 555 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 AOPEPQ8N6M6 819 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms