RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 PTPRCP08575 1304 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 IGF2BP3O00425 579 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP48-207ENST00000471752 BCAR3O75815 825 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 SLURP2P0DP57 97 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 CRKP46108 304 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 RARSP54136 660 aaKnown RBP10.16□□□□□ -0.78
USP48-207ENST00000471752 FKBP1AP62942 108 aaKnown RBP10.16□□□□□ -0.78
USP48-207ENST00000471752 SPDYE2Q495Y8 402 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 APOBEC3FQ8IUX4 373 aaKnown RBP10.16□□□□□ -0.78
USP48-207ENST00000471752 ZNF296Q8WUU4 475 aaPredicted RBP10.16□□□□□ -0.78
USP48-207ENST00000471752 MEIS3Q99687 375 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 PTPN18Q99952 460 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 SAGE1Q9NXZ1 904 aa10.16□□□□□ -0.78
USP48-207ENST00000471752 LRRFIP2Q9Y608 721 aaKnown RBP10.16□□□□□ -0.78
USP48-207ENST00000471752 MROH5Q6ZUA9 1318 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 EYA2O00167 538 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 ADORA1P30542 326 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 SOX10P56693 466 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 ALDH1L2Q3SY69 923 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 APOBEC3HQ6NTF7 200 aaKnown RBP10.15□□□□□ -0.78
USP48-207ENST00000471752 MIER1Q8N108 512 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 SLC10A4Q96EP9 437 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 A0A1B0GUL6 1792 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 MKI67P46013 3256 aaKnown RBP10.15□□□□□ -0.78
USP48-207ENST00000471752 CACNA1FO60840 1977 aa10.15□□□□□ -0.78
USP48-207ENST00000471752 PAPPA2Q9BXP8 1791 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 DIXDC1Q155Q3 683 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 MAP3K11Q16584 847 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.14□□□□□ -0.79
USP48-207ENST00000471752 ARMC9Q7Z3E5 817 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 ZFPM1Q8IX07 1006 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 WNK4Q96J92 1243 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 ELP3Q9H9T3 547 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 SERPINA10Q9UK55 444 aa10.14□□□□□ -0.79
USP48-207ENST00000471752 COL1A1P02452 1464 aaPredicted RBP10.14□□□□□ -0.79
USP48-207ENST00000471752 GPR25O00155 361 aa10.13□□□□□ -0.79
USP48-207ENST00000471752 NF2P35240 595 aa10.13□□□□□ -0.79
USP48-207ENST00000471752 PHKA1P46020 1223 aa10.13□□□□□ -0.79
USP48-207ENST00000471752 RGS19P49795 217 aa10.13□□□□□ -0.79
USP48-207ENST00000471752 TIMM10P62072 90 aa10.13□□□□□ -0.79
USP48-207ENST00000471752 CCER2I3L3R5 266 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 MMP14P50281 582 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 CTU1Q7Z7A3 348 aaKnown RBP10.12□□□□□ -0.79
USP48-207ENST00000471752 VPS37DQ86XT2 251 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 IFNL1Q8IU54 200 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 ZKSCAN4Q969J2 545 aaPredicted RBP10.12□□□□□ -0.79
USP48-207ENST00000471752 CLUAP1Q96AJ1 413 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 HPS5Q9UPZ3 1129 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 BRCA2P51587 3418 aa10.12□□□□□ -0.79
USP48-207ENST00000471752 FRAT2O75474 233 aaPredicted RBP10.11□□□□□ -0.79
USP48-207ENST00000471752 UBTFL1P0CB47 393 aaPredicted RBP10.11□□□□□ -0.79
USP48-207ENST00000471752 PRDX5P30044 214 aa10.11□□□□□ -0.79
USP48-207ENST00000471752 NFIAQ12857 509 aa10.11□□□□□ -0.79
USP48-207ENST00000471752 PUM3Q15397 648 aaKnown RBP10.11□□□□□ -0.79
USP48-207ENST00000471752 SUPT20HL1Q3ZLR7 823 aa10.11□□□□□ -0.79
USP48-207ENST00000471752 MIGA2Q7L4E1 593 aa10.11□□□□□ -0.79
USP48-207ENST00000471752 MS4A4AQ96JQ5 239 aa10.11□□□□□ -0.79
USP48-207ENST00000471752 MYO1BO43795 1136 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 PPP1R12BO60237 982 aaPredicted RBP10.1□□□□□ -0.79
USP48-207ENST00000471752 TRIM27P14373 513 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 MLLT1Q03111 559 aaPredicted RBP10.1□□□□□ -0.79
USP48-207ENST00000471752 TFCP2Q12800 502 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 VGLL4Q14135 290 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 ATP2B3Q16720 1220 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 CAVIN4Q5BKX8 364 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 INTS3Q68E01 1043 aaKnown RBP10.1□□□□□ -0.79
USP48-207ENST00000471752 CDC42EP5Q6NZY7 148 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 PI16Q6UXB8 463 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 ZNF384Q8TF68 577 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 BRI3BPQ8WY22 251 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 LPIN2Q92539 896 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 OPTNQ96CV9 577 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 DAGLAQ9Y4D2 1042 aa10.1□□□□□ -0.79
USP48-207ENST00000471752 PNMA6EA0A0J9YXQ4 647 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 FKTNO75072 461 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 ECM2O94769 699 aaPredicted RBP10.09□□□□□ -0.79
USP48-207ENST00000471752 IFIT1P09914 478 aaKnown RBP10.09□□□□□ -0.79
USP48-207ENST00000471752 INPP5BP32019 993 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 IREB2P48200 963 aaKnown RBP10.09□□□□□ -0.79
USP48-207ENST00000471752 MAP3K9P80192 1104 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 TCP10Q12799 353 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 CRHR2Q13324 411 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 FAM43AQ8N2R8 423 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP48-207ENST00000471752 FRAT1Q92837 279 aaPredicted RBP10.09□□□□□ -0.79
USP48-207ENST00000471752 TEKT1Q969V4 418 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 ZDHHC15Q96MV8 337 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 API5Q9BZZ5 524 aaKnown RBP10.09□□□□□ -0.79
USP48-207ENST00000471752 COPRSQ9NQ92 184 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 CEP126Q9P2H0 1117 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 FAM198AQ9UFP1 575 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 PPP2R3BQ9Y5P8 575 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 SNCAIPQ9Y6H5 919 aa10.09□□□□□ -0.79
USP48-207ENST00000471752 TESPA1A2RU30 521 aaPredicted RBP10.08□□□□□ -0.8
USP48-207ENST00000471752 RLBP1P12271 317 aa10.08□□□□□ -0.8
USP48-207ENST00000471752 SLC5A1P13866 664 aa10.08□□□□□ -0.8
USP48-207ENST00000471752 HDLBPQ00341 1268 aaKnown RBP10.08□□□□□ -0.8
USP48-207ENST00000471752 SREBF2Q12772 1141 aa10.08□□□□□ -0.8
USP48-207ENST00000471752 CCDC102BQ68D86 513 aa10.08□□□□□ -0.8
USP48-207ENST00000471752 HHIPL2Q6UWX4 724 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms