RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 CRKP46108 304 aa21.91■■□□□ 1.1
COL7A1-208ENST00000470076 HDLBPQ00341 1268 aaKnown RBP21.91■■□□□ 1.1
COL7A1-208ENST00000470076 WNK4Q96J92 1243 aa21.91■■□□□ 1.1
COL7A1-208ENST00000470076 CLMNQ96JQ2 1002 aa21.91■■□□□ 1.1
COL7A1-208ENST00000470076 USP2O75604 605 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-208ENST00000470076 IFIT1P09914 478 aaKnown RBP21.9■■□□□ 1.1
COL7A1-208ENST00000470076 CHAF1AQ13111 956 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-208ENST00000470076 PUM3Q15397 648 aaKnown RBP21.9■■□□□ 1.1
COL7A1-208ENST00000470076 ANKRD13AQ8IZ07 590 aa21.9■■□□□ 1.1
COL7A1-208ENST00000470076 EYA2O00167 538 aa21.89■■□□□ 1.09
COL7A1-208ENST00000470076 TNNI2P48788 182 aa21.89■■□□□ 1.09
COL7A1-208ENST00000470076 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-208ENST00000470076 FKTNO75072 461 aa21.88■■□□□ 1.09
COL7A1-208ENST00000470076 FGFR2P21802 821 aa21.88■■□□□ 1.09
COL7A1-208ENST00000470076 RFX5P48382 616 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-208ENST00000470076 BCAMP50895 628 aa21.88■■□□□ 1.09
COL7A1-208ENST00000470076 GRIK5Q16478 980 aa21.88■■□□□ 1.09
COL7A1-208ENST00000470076 IFNL1Q8IU54 200 aa21.88■■□□□ 1.09
COL7A1-208ENST00000470076 TEKT1Q969V4 418 aa21.87■■□□□ 1.09
COL7A1-208ENST00000470076 TEPSINQ96N21 525 aa21.87■■□□□ 1.09
COL7A1-208ENST00000470076 MRIQ9BWK5 157 aa21.87■■□□□ 1.09
COL7A1-208ENST00000470076 SUGT1Q9Y2Z0 365 aa21.87■■□□□ 1.09
COL7A1-208ENST00000470076 MAST3O60307 1309 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 TCP10L2B9ZVM9 353 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 UBTFL1P0CB47 393 aaPredicted RBP21.86■■□□□ 1.09
COL7A1-208ENST00000470076 R3HDMLQ9H3Y0 253 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 FBXO3Q9UK99 471 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 HPS5Q9UPZ3 1129 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 OTOFQ9HC10 1997 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 TNRC18O15417 2968 aaPredicted RBP21.86■■□□□ 1.09
COL7A1-208ENST00000470076 MYH13Q9UKX3 1938 aa21.86■■□□□ 1.09
COL7A1-208ENST00000470076 CCER2I3L3R5 266 aa21.85■■□□□ 1.09
COL7A1-208ENST00000470076 SLC5A1P13866 664 aa21.85■■□□□ 1.09
COL7A1-208ENST00000470076 LPIN2Q92539 896 aa21.85■■□□□ 1.09
COL7A1-208ENST00000470076 API5Q9BZZ5 524 aaKnown RBP21.85■■□□□ 1.09
COL7A1-208ENST00000470076 NOB1Q9ULX3 412 aaKnown RBP21.85■■□□□ 1.09
COL7A1-208ENST00000470076 HDAC5Q9UQL6 1122 aa21.85■■□□□ 1.09
COL7A1-208ENST00000470076 IGF2BP3O00425 579 aaKnown RBP eCLIP21.84■■□□□ 1.09
COL7A1-208ENST00000470076 SOX10P56693 466 aa21.84■■□□□ 1.09
COL7A1-208ENST00000470076 OTUD7BQ6GQQ9 843 aa21.84■■□□□ 1.09
COL7A1-208ENST00000470076 ATG9AQ7Z3C6 839 aa21.84■■□□□ 1.09
COL7A1-208ENST00000470076 ZDHHC15Q96MV8 337 aa21.84■■□□□ 1.09
COL7A1-208ENST00000470076 TMEM39BQ9GZU3 492 aa21.84■■□□□ 1.09
COL7A1-208ENST00000470076 GJA5P36382 358 aa21.83■■□□□ 1.09
COL7A1-208ENST00000470076 FBXO46Q6PJ61 603 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-208ENST00000470076 CDAN1Q8IWY9 1227 aa21.83■■□□□ 1.09
COL7A1-208ENST00000470076 WDR66Q8TBY9 1149 aa21.83■■□□□ 1.09
COL7A1-208ENST00000470076 TMOD2Q9NZR1 351 aa21.83■■□□□ 1.09
COL7A1-208ENST00000470076 PDE4DIPQ5VU43 2346 aa21.83■■□□□ 1.08
COL7A1-208ENST00000470076 CIAO1O76071 339 aa21.82■■□□□ 1.08
COL7A1-208ENST00000470076 FKBP1CQ5VVH2 108 aa21.82■■□□□ 1.08
COL7A1-208ENST00000470076 HHIPL2Q6UWX4 724 aa21.82■■□□□ 1.08
COL7A1-208ENST00000470076 OPTNQ96CV9 577 aa21.82■■□□□ 1.08
COL7A1-208ENST00000470076 ELP3Q9H9T3 547 aa21.82■■□□□ 1.08
COL7A1-208ENST00000470076 TESPA1A2RU30 521 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-208ENST00000470076 MAP3K9P80192 1104 aa21.81■■□□□ 1.08
COL7A1-208ENST00000470076 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-208ENST00000470076 FAM83AQ86UY5 434 aa21.81■■□□□ 1.08
COL7A1-208ENST00000470076 CEP126Q9P2H0 1117 aa21.81■■□□□ 1.08
COL7A1-208ENST00000470076 CACNB3P54284 484 aa21.8■■□□□ 1.08
COL7A1-208ENST00000470076 APOBEC3HQ6NTF7 200 aaKnown RBP21.8■■□□□ 1.08
COL7A1-208ENST00000470076 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.8■■□□□ 1.08
COL7A1-208ENST00000470076 HOOK2Q96ED9 719 aa21.8■■□□□ 1.08
COL7A1-208ENST00000470076 SIL1Q9H173 461 aa21.8■■□□□ 1.08
COL7A1-208ENST00000470076 CSADQ9Y600 493 aa21.8■■□□□ 1.08
COL7A1-208ENST00000470076 VGLL4Q14135 290 aa21.79■■□□□ 1.08
COL7A1-208ENST00000470076 ATP2B3Q16720 1220 aa21.79■■□□□ 1.08
COL7A1-208ENST00000470076 GNL3LQ9NVN8 582 aaKnown RBP21.79■■□□□ 1.08
COL7A1-208ENST00000470076 LRRFIP2Q9Y608 721 aaKnown RBP21.79■■□□□ 1.08
COL7A1-208ENST00000470076 IL15P40933 162 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-208ENST00000470076 RARSP54136 660 aaKnown RBP21.78■■□□□ 1.08
COL7A1-208ENST00000470076 ARHGAP45Q92619 1136 aa21.78■■□□□ 1.08
COL7A1-208ENST00000470076 PTPN18Q99952 460 aa21.78■■□□□ 1.08
COL7A1-208ENST00000470076 CRHR2Q13324 411 aa21.77■■□□□ 1.08
COL7A1-208ENST00000470076 MS4A4AQ96JQ5 239 aa21.77■■□□□ 1.08
COL7A1-208ENST00000470076 RPAP1Q9BWH6 1393 aaPredicted RBP21.76■■□□□ 1.07
COL7A1-208ENST00000470076 GTF2A2P52657 109 aa21.76■■□□□ 1.07
COL7A1-208ENST00000470076 ERO1AQ96HE7 468 aa21.76■■□□□ 1.07
COL7A1-208ENST00000470076 MEIS3Q99687 375 aa21.76■■□□□ 1.07
COL7A1-208ENST00000470076 COPRSQ9NQ92 184 aa21.76■■□□□ 1.07
COL7A1-208ENST00000470076 TRIM17Q9Y577 477 aa21.76■■□□□ 1.07
COL7A1-208ENST00000470076 SEMA3EO15041 775 aa21.75■■□□□ 1.07
COL7A1-208ENST00000470076 DCAF15Q66K64 600 aa21.75■■□□□ 1.07
COL7A1-208ENST00000470076 INTS3Q68E01 1043 aaKnown RBP21.75■■□□□ 1.07
COL7A1-208ENST00000470076 OTOP1Q7RTM1 612 aa21.75■■□□□ 1.07
COL7A1-208ENST00000470076 CNKSR2Q8WXI2 1034 aa21.75■■□□□ 1.07
COL7A1-208ENST00000470076 HTTP42858 3142 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 CCL15-CCL14A0A0B4J2E2 113 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 SPDYE5A6NIY4 337 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 ZBTB22O15209 634 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 GNAI3P08754 354 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 CCL15Q16663 113 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 BRI3BPQ8WY22 251 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 OTUD5Q96G74 571 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 WRNIP1Q96S55 665 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 DENND2AQ9ULE3 1009 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 PA2G4Q9UQ80 394 aaKnown RBP21.74■■□□□ 1.07
COL7A1-208ENST00000470076 SALL1Q9NSC2 1324 aa21.74■■□□□ 1.07
COL7A1-208ENST00000470076 LDHBP07195 334 aaKnown RBP21.73■■□□□ 1.07
COL7A1-208ENST00000470076 PRDX5P30044 214 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms