RNA–Protein interactions for RNA: ENST00000469923.5

SHROOM3-203, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 764 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-203ENST00000469923 ATP2B3Q16720 1220 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 TBC1D9Q6ZT07 1266 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 ZNF384Q8TF68 577 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 ARHGAP45Q92619 1136 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 COPRSQ9NQ92 184 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 HDAC9Q9UKV0 1011 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 MYO3BQ8WXR4 1341 aa11.52□□□□□ -0.57
SHROOM3-203ENST00000469923 FRAT2O75474 233 aaPredicted RBP11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 CT47B1P0C2W7 299 aaPredicted RBP11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 PRDX5P30044 214 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 FKBP1AP62942 108 aaKnown RBP11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 NOGQ13253 232 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 SPDYE2Q495Y8 402 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 VPS37DQ86XT2 251 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 ABHD8Q96I13 439 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 CEP126Q9P2H0 1117 aa11.51□□□□□ -0.57
SHROOM3-203ENST00000469923 ZBTB7BO15156 539 aaPredicted RBP11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 NFIAQ12857 509 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 CCDC102BQ68D86 513 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 LPIN2Q92539 896 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 CCDC102AQ96A19 550 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 PTPN18Q99952 460 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 MCOLN1Q9GZU1 580 aa11.5□□□□□ -0.57
SHROOM3-203ENST00000469923 CIAO1O76071 339 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 IFIT1P09914 478 aaKnown RBP11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 SLC5A1P13866 664 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 CAVIN4Q5BKX8 364 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 C20orf194Q5TEA3 1177 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 SPRYD7Q5W111 196 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 ZKSCAN2Q63HK3 967 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 MIGA2Q7L4E1 593 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 APOBEC3FQ8IUX4 373 aaKnown RBP11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 SLC10A4Q96EP9 437 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 XAGE2Q96GT9 111 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 ELP3Q9H9T3 547 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 SNRKQ9NRH2 765 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 SERPINA10Q9UK55 444 aa11.49□□□□□ -0.57
SHROOM3-203ENST00000469923 IGF2BP3O00425 579 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 GNAI2P04899 355 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 IL15P40933 162 aaPredicted RBP11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 RASGRF1Q13972 1273 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 CDC42EP5Q6NZY7 148 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 SH3BP5LQ7L8J4 393 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 ZKSCAN4Q969J2 545 aaPredicted RBP11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 NEUROD6Q96NK8 337 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 BEGAINQ9BUH8 593 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 DAGLAQ9Y4D2 1042 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 NDUFB9Q9Y6M9 179 aa11.48□□□□□ -0.57
SHROOM3-203ENST00000469923 THSD7BQ9C0I4 1608 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 A0A1B0GUL7 405 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 TM4SF4P48230 202 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 ATP8B2P98198 1209 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 TCP10Q12799 353 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 MTX1Q13505 466 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 POLA2Q14181 598 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 ZDHHC15Q96MV8 337 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 TLR7Q9NYK1 1049 aaKnown RBP11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 FAM198AQ9UFP1 575 aa11.47□□□□□ -0.57
SHROOM3-203ENST00000469923 CCDC85CA6NKD9 419 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 IPO8O15397 1037 aaKnown RBP11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 GNAI3P08754 354 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 FKBP1BP68106 108 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 DGKZQ13574 1117 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 ARMC9Q7Z3E5 817 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 SIRT2Q8IXJ6 389 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 WNK4Q96J92 1243 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 USP40Q9NVE5 1235 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 HMG20BQ9P0W2 317 aa11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.46□□□□□ -0.57
SHROOM3-203ENST00000469923 KIF16BQ96L93 1317 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 ECM2O94769 699 aaPredicted RBP11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 INPP5BP32019 993 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 MAP3K11Q16584 847 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 ITPRIPQ8IWB1 547 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 ZNF296Q8WUU4 475 aaPredicted RBP11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 TEKT1Q969V4 418 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 DBNDD2Q9BQY9 259 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 CCDC8Q9H0W5 538 aaPredicted RBP11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 BCL11AQ9H165 835 aa11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 DDX4Q9NQI0 724 aaKnown RBP11.45□□□□□ -0.58
SHROOM3-203ENST00000469923 HTTP42858 3142 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 VGLL4Q14135 290 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 SUPT20HL1Q3ZLR7 823 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 CCDC84Q86UT8 332 aaPredicted RBP11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 SSH3Q8TE77 659 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 MS4A4AQ96JQ5 239 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 ABCF2Q9UG63 623 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 COG6Q9Y2V7 657 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 CENPFP49454 3210 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 PAPPA2Q9BXP8 1791 aa11.44□□□□□ -0.58
SHROOM3-203ENST00000469923 ZBED9Q6R2W3 1325 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 FAM196BA6NMK8 535 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 MYO1BO43795 1136 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 SURF6O75683 361 aaKnown RBP11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 LDHBP07195 334 aaKnown RBP11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 NF2P35240 595 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 MCAMP43121 646 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 MAP3K9P80192 1104 aa11.43□□□□□ -0.58
SHROOM3-203ENST00000469923 HDLBPQ00341 1268 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms