RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 G3V3G9 751 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 EIF5BO60841 1220 aaKnown RBP12.93□□□□□ -0.34
MSX1-202ENST00000468421 CYP7A1P22680 504 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 RASSF7Q02833 373 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 MECOMQ03112 1051 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 MFSD14BQ5SR56 506 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 DCAF8Q5TAQ9 597 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 PODNQ7Z5L7 613 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 ZGPATQ8N5A5 531 aaKnown RBP12.93□□□□□ -0.34
MSX1-202ENST00000468421 CERS5Q8N5B7 392 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 NSUN4Q96CB9 384 aaKnown RBP12.93□□□□□ -0.34
MSX1-202ENST00000468421 MXD3Q9BW11 206 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 TAOK3Q9H2K8 898 aa12.93□□□□□ -0.34
MSX1-202ENST00000468421 GPAA1O43292 621 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 IARSP41252 1262 aaKnown RBP12.92□□□□□ -0.34
MSX1-202ENST00000468421 RBM25P49756 843 aaKnown RBP12.92□□□□□ -0.34
MSX1-202ENST00000468421 PRELPP51888 382 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 VPS53Q5VIR6 699 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 TTLL5Q6EMB2 1281 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 NAA16Q6N069 864 aaPredicted RBP12.92□□□□□ -0.34
MSX1-202ENST00000468421 KIAA1211Q6ZU35 1233 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 FBXW7Q969H0 707 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 FOCADQ5VW36 1801 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 ECM29Q5VYK3 1845 aa12.92□□□□□ -0.34
MSX1-202ENST00000468421 BAZ2AQ9UIF9 1905 aaKnown RBP12.92□□□□□ -0.34
MSX1-202ENST00000468421 LTBP3Q9NS15 1303 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 TIAM2Q8IVF5 1701 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 FOXP2O15409 715 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 EPB41L2O43491 1005 aaKnown RBP12.91□□□□□ -0.34
MSX1-202ENST00000468421 MBD4O95243 580 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 LDHBP07195 334 aaKnown RBP12.91□□□□□ -0.34
MSX1-202ENST00000468421 SPTY2D1Q68D10 685 aaPredicted RBP12.91□□□□□ -0.34
MSX1-202ENST00000468421 DZIP1Q86YF9 867 aaKnown RBP12.91□□□□□ -0.34
MSX1-202ENST00000468421 LARGE2Q8N3Y3 721 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 MIGA1Q8NAN2 632 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 TBC1D22AQ8WUA7 517 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 LAMB1P07942 1786 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 NAV1Q8NEY1 1877 aa12.91□□□□□ -0.34
MSX1-202ENST00000468421 DIXDC1Q155Q3 683 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 DACT2Q5SW24 774 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 LCORLQ8N3X6 602 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 MAP4K1Q92918 833 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 KIF2CQ99661 725 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 VPS33BQ9H267 617 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 ARMT1Q9H993 441 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 PALD1Q9ULE6 856 aa12.9□□□□□ -0.34
MSX1-202ENST00000468421 RBM8AQ9Y5S9 174 aaKnown RBP12.9□□□□□ -0.34
MSX1-202ENST00000468421 DDX60LQ5H9U9 1706 aaKnown RBP12.89□□□□□ -0.35
MSX1-202ENST00000468421 USP17L3A6NCW0 530 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 USP17L4A6NCW7 530 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 HSPD1P10809 573 aaKnown RBP12.89□□□□□ -0.35
MSX1-202ENST00000468421 HSPA4P34932 840 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 DYNLL1P63167 89 aaKnown RBP12.89□□□□□ -0.35
MSX1-202ENST00000468421 STRIP1Q5VSL9 837 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 USP17L1Q7RTZ2 530 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 NIM1KQ8IY84 436 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 AIDAQ96BJ3 306 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 STRBPQ96SI9 672 aaKnown RBP12.89□□□□□ -0.35
MSX1-202ENST00000468421 RIOK1Q9BRS2 568 aaKnown RBP12.89□□□□□ -0.35
MSX1-202ENST00000468421 DSCC1Q9BVC3 393 aa12.89□□□□□ -0.35
MSX1-202ENST00000468421 MAGEB6P1A0A0J9YX57 407 aa12.88□□□□□ -0.35
MSX1-202ENST00000468421 F8W031 263 aaPredicted RBP12.88□□□□□ -0.35
MSX1-202ENST00000468421 IGSF3O75054 1194 aa12.88□□□□□ -0.35
MSX1-202ENST00000468421 YBX3P16989 372 aaKnown RBP eCLIP12.88□□□□□ -0.35
MSX1-202ENST00000468421 FKBP1AP62942 108 aaKnown RBP12.88□□□□□ -0.35
MSX1-202ENST00000468421 NECTIN1Q15223 517 aa12.88□□□□□ -0.35
MSX1-202ENST00000468421 MROH7-TTC4A0A0A0MT08 1334 aa12.88□□□□□ -0.35
MSX1-202ENST00000468421 PSMD14O00487 310 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 PRKAB2O43741 272 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 RAD17O75943 681 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 MCCP23508 829 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 RASEFQ8IZ41 740 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 EPB41L4AQ9HCS5 686 aaPredicted RBP12.87□□□□□ -0.35
MSX1-202ENST00000468421 AATFQ9NY61 560 aaKnown RBP eCLIP12.87□□□□□ -0.35
MSX1-202ENST00000468421 TTF2Q9UNY4 1162 aaKnown RBP12.87□□□□□ -0.35
MSX1-202ENST00000468421 SUGT1Q9Y2Z0 365 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 TAF6LQ9Y6J9 622 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 GAKO14976 1311 aa12.87□□□□□ -0.35
MSX1-202ENST00000468421 MYH1P12882 1939 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 SLC27A2O14975 620 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 SCNN1DP51172 638 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 GSTO1P78417 241 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 CREB3L3Q68CJ9 461 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 TMED8Q6PL24 325 aaPredicted RBP12.86□□□□□ -0.35
MSX1-202ENST00000468421 ARHGAP27Q6ZUM4 889 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 KCNB2Q92953 911 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 IL17RAQ96F46 866 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 ZNRF3Q9ULT6 936 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 DAGLAQ9Y4D2 1042 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 SNX14Q9Y5W7 946 aa12.86□□□□□ -0.35
MSX1-202ENST00000468421 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
MSX1-202ENST00000468421 GSG1L2A8MUP6 293 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 LDHCP07864 332 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 VIL1P09327 827 aaKnown RBP12.85□□□□□ -0.35
MSX1-202ENST00000468421 CXCL9Q07325 125 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 KIAA0825Q8IV33 1275 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 SDR42E1Q8WUS8 393 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 FAM163AQ96GL9 167 aaPredicted RBP12.85□□□□□ -0.35
MSX1-202ENST00000468421 SLC4A4Q9Y6R1 1079 aa12.85□□□□□ -0.35
MSX1-202ENST00000468421 GPR75-ASB3A0A0A6YYF3 556 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms