RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZNF804BA4D1E1 1349 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 UBE3BQ7Z3V4 1068 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 TXNRD3Q86VQ6 643 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 BRI3BPQ8WY22 251 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 PLA2G12BQ9BX93 195 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 ELP3Q9H9T3 547 aa15□□□□□ -0.01
SQSTM1-206ENST00000466342 LAMA3Q16787 3333 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 GJA8P48165 433 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 GTF2A2P52657 109 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 GTF2IP78347 998 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 LACTBP83111 547 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 GPR153Q6NV75 609 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 ARHGAP39Q9C0H5 1083 aa14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 BSDC1Q9NW68 430 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 NOB1Q9ULX3 412 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-206ENST00000466342 CCL15-CCL14A0A0B4J2E2 113 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 MYO1BO43795 1136 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 TLR2O60603 784 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 WDHD1O75717 1129 aaPredicted RBP14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 BCAR3O75815 825 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 GJB1P08034 283 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 CASP7P55210 303 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 CCL15Q16663 113 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 BEND3Q5T5X7 828 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 FAM43AQ8N2R8 423 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 COL25A1Q9BXS0 654 aaPredicted RBP14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 GREM2Q9H772 168 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 LEMD3Q9Y2U8 911 aa14.98□□□□□ -0.01
SQSTM1-206ENST00000466342 CSF1RP07333 972 aa14.97□□□□□ -0.01
SQSTM1-206ENST00000466342 SLC4A10Q6U841 1118 aa14.97□□□□□ -0.01
SQSTM1-206ENST00000466342 ARHGAP45Q92619 1136 aa14.97□□□□□ -0.01
SQSTM1-206ENST00000466342 API5Q9BZZ5 524 aaKnown RBP14.97□□□□□ -0.01
SQSTM1-206ENST00000466342 STXBP5LQ9Y2K9 1186 aa14.97□□□□□ -0.01
SQSTM1-206ENST00000466342 CLRN2A0PK11 232 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 ALDH1L1O75891 902 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 RASA3Q14644 834 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 DEFB123Q8N688 67 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 PRMT6Q96LA8 375 aaPredicted RBP14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 VEZTQ9HBM0 779 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 STAP2Q9UGK3 403 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 PCDHAC2Q9Y5I4 1007 aa14.96□□□□□ -0.01
SQSTM1-206ENST00000466342 IPO8O15397 1037 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 GRK4P32298 578 aa14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 IGHMBP2P38935 993 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 CNKSR2Q8WXI2 1034 aa14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 SRCIN1Q9C0H9 1055 aa14.95□□□□□ -0.02
SQSTM1-206ENST00000466342 ALPK3Q96L96 1907 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 SPDYE2BA6NHP3 402 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 EVI5O60447 810 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 SPDYE6P0CI01 402 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 CCL5P13501 91 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 ITGA6P23229 1130 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 CFAP100Q494V2 611 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 CERS5Q8N5B7 392 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 FRAT1Q92837 279 aaPredicted RBP14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 RNF208Q9H0X6 261 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 ZCCHC17Q9NP64 241 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 SRRDQ9UH36 339 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 RCAN3Q9UKA8 241 aa14.94□□□□□ -0.02
SQSTM1-206ENST00000466342 MGAMO43451 1857 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 TRIM27P14373 513 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 HOXD10P28358 340 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 MAP3K9P80192 1104 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 ZKSCAN2Q63HK3 967 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 ATF7IPQ6VMQ6 1270 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 HELBQ8NG08 1087 aaPredicted RBP14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 TRIM47Q96LD4 638 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 MPHOSPH8Q99549 860 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 CD209Q9NNX6 404 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 RIPOR2Q9Y4F9 1068 aa14.93□□□□□ -0.02
SQSTM1-206ENST00000466342 GRM8O00222 908 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 FARP2O94887 1054 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 CETPP11597 493 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 KLRK1P26718 216 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 BMP8BP34820 402 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 UBXN2AP68543 259 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 FOXO4P98177 505 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 RAET1EQ8TD07 263 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 U2AF1L4Q8WU68 220 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 ANKRD2Q9GZV1 360 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 MTMR10Q9NXD2 777 aa14.92□□□□□ -0.02
SQSTM1-206ENST00000466342 ANKRD18BA2A2Z9 1011 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 F8W031 263 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 SGPL1O95470 568 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 CAPN2P17655 700 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 CTGFP29279 349 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 PSMC4P43686 418 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 IFIT5Q13325 482 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 TNFAIP1Q13829 316 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 VGLL4Q14135 290 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 C17orf99Q6UX52 265 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 Q7L0L9 218 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 GDF15Q99988 308 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 C9orf78Q9NZ63 289 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 BIN2Q9UBW5 565 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 CSADQ9Y600 493 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 AOX1Q06278 1338 aa14.91□□□□□ -0.02
SQSTM1-206ENST00000466342 BTBD19C9JJ37 291 aa14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 ECM2O94769 699 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms