RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 RASGRF1Q13972 1273 aa16.84■□□□□ 0.29
SEMA3D-203ENST00000463315 DLGAP5Q15398 846 aa16.84■□□□□ 0.29
SEMA3D-203ENST00000463315 DCTPP1Q9H773 170 aa16.84■□□□□ 0.29
SEMA3D-203ENST00000463315 TTF2Q9UNY4 1162 aaKnown RBP16.84■□□□□ 0.29
SEMA3D-203ENST00000463315 SUPT16HQ9Y5B9 1047 aaKnown RBP16.84■□□□□ 0.29
SEMA3D-203ENST00000463315 MYO1BO43795 1136 aa16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 SPTY2D1Q68D10 685 aaPredicted RBP16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 SULF1Q8IWU6 871 aa16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 EAF2Q96CJ1 260 aaPredicted RBP16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 CREBZFQ9NS37 354 aa16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 JAG2Q9Y219 1238 aa16.83■□□□□ 0.28
SEMA3D-203ENST00000463315 CEP350Q5VT06 3117 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 NBPF9Q3BBW0 867 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 HHIPL2Q6UWX4 724 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 KRT26Q7Z3Y9 468 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 GGA3Q9NZ52 723 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 PCDHB15Q9Y5E8 787 aa16.82■□□□□ 0.28
SEMA3D-203ENST00000463315 COL1A1P02452 1464 aaPredicted RBP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 MYH13Q9UKX3 1938 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 LDHBP07195 334 aaKnown RBP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 FXR2P51116 673 aaKnown RBP eCLIP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 CFAP100Q494V2 611 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 ANGEL2Q5VTE6 544 aaKnown RBP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 APOBEC3FQ8IUX4 373 aaKnown RBP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 SPATA5Q8NB90 893 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 TEKT1Q969V4 418 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 ZDHHC15Q96MV8 337 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 DBNDD2Q9BQY9 259 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 LRRCC1Q9C099 1032 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 HMG20BQ9P0W2 317 aa16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 DBNLQ9UJU6 430 aaKnown RBP16.81■□□□□ 0.28
SEMA3D-203ENST00000463315 TMEM88BA6NKF7 163 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 F8W031 263 aaPredicted RBP16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 CRKP46108 304 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 HDAC1Q13547 482 aaPredicted RBP16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 TTC39AQ5SRH9 613 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 TMED8Q6PL24 325 aaPredicted RBP16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 AACSQ86V21 672 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 SLF2Q8IX21 1173 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 PPP2R3BQ9Y5P8 575 aa16.8■□□□□ 0.28
SEMA3D-203ENST00000463315 MCAMP43121 646 aa16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 FAM163AQ96GL9 167 aaPredicted RBP16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 PRMT6Q96LA8 375 aaPredicted RBP16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 GLIS2Q9BZE0 524 aaPredicted RBP16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 CCDC8Q9H0W5 538 aaPredicted RBP16.79■□□□□ 0.28
SEMA3D-203ENST00000463315 IFIT2P09913 472 aaKnown RBP16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 PRDX5P30044 214 aa16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 RBM5P52756 815 aaKnown RBP eCLIP16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 GRIK5Q16478 980 aa16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 USP48Q86UV5 1035 aa16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 IL1RAPL2Q9NP60 686 aa16.78■□□□□ 0.28
SEMA3D-203ENST00000463315 TNFAIP1Q13829 316 aa16.77■□□□□ 0.28
SEMA3D-203ENST00000463315 FKBP1CQ5VVH2 108 aa16.77■□□□□ 0.28
SEMA3D-203ENST00000463315 GCC1Q96CN9 775 aa16.77■□□□□ 0.28
SEMA3D-203ENST00000463315 ASTN2O75129 1339 aaPredicted RBP16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 TRAF5O00463 557 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 FKBP1BP68106 108 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 CST9Q5W186 159 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 ERICH6Q7L0X2 663 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 HHIPL1Q96JK4 782 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 TLR7Q9NYK1 1049 aaKnown RBP16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 ABCF2Q9UG63 623 aa16.76■□□□□ 0.27
SEMA3D-203ENST00000463315 ECM29Q5VYK3 1845 aa16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 APBB1O00213 710 aa16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 MAP4K4O95819 1239 aaPredicted RBP16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 LDHCP07864 332 aa16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 GSTO1P78417 241 aa16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 APOBEC3HQ6NTF7 200 aaKnown RBP16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 DZIP1Q86YF9 867 aaKnown RBP16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 RWDD1Q9H446 243 aaPredicted RBP16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 TRPM7Q96QT4 1865 aa16.75■□□□□ 0.27
SEMA3D-203ENST00000463315 GAKO14976 1311 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 ADM5C9JUS6 153 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 CELF2O95319 508 aaKnown RBP16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 TNNI2P48788 182 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 TTF1Q15361 905 aaPredicted RBP16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 PI16Q6UXB8 463 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 DNAJC5GQ8N7S2 189 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 EXOC6Q8TAG9 804 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 DEFB129Q9H1M3 183 aa16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 ZNF70Q9UC06 446 aaPredicted RBP16.74■□□□□ 0.27
SEMA3D-203ENST00000463315 POLR2AP24928 1970 aaKnown RBP16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 AKAP11Q9UKA4 1901 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 RASSF10A6NK89 507 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 CYP2E1P05181 493 aaPredicted RBP16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 ATP5JP18859 108 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 NF2P35240 595 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 FAM83AQ86UY5 434 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 C2orf69Q8N8R5 385 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 NSUN4Q96CB9 384 aaKnown RBP16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 CDCA5Q96FF9 252 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 TDRD3Q9H7E2 651 aaKnown RBP16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 TMOD2Q9NZR1 351 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 LRP2BPQ9P2M1 347 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 DAGLAQ9Y4D2 1042 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 PCDHAC2Q9Y5I4 1007 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 TLL2Q9Y6L7 1015 aa16.73■□□□□ 0.27
SEMA3D-203ENST00000463315 ZAP70P43403 619 aa16.72■□□□□ 0.27
SEMA3D-203ENST00000463315 MECOMQ03112 1051 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms