RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 FBXO33Q7Z6M2 555 aa17.16■□□□□ 0.34
HDAC6-213ENST00000462730 CRAMP1Q96RY5 1269 aa17.16■□□□□ 0.34
HDAC6-213ENST00000462730 WDR33Q9C0J8 1336 aaKnown RBP17.16■□□□□ 0.34
HDAC6-213ENST00000462730 LTBP1Q14766 1721 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 GJB2P29033 226 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 HAND2P61296 217 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 TXNRD3Q86VQ6 643 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 LRRC2Q9BYS8 371 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 LEMD3Q9Y2U8 911 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 BBOX1O75936 387 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 HIBADHP31937 336 aaKnown RBP17.15■□□□□ 0.34
HDAC6-213ENST00000462730 GPSM2P81274 684 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 FGD1P98174 961 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 AIDAQ96BJ3 306 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 DENND2AQ9ULE3 1009 aa17.15■□□□□ 0.34
HDAC6-213ENST00000462730 SRGNP10124 158 aa17.14■□□□□ 0.33
HDAC6-213ENST00000462730 STK3Q13188 491 aa17.14■□□□□ 0.33
HDAC6-213ENST00000462730 RRAGDQ9NQL2 400 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-213ENST00000462730 CACNA1SQ13698 1873 aa17.14■□□□□ 0.33
HDAC6-213ENST00000462730 PPEF1O14829 653 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-213ENST00000462730 SEMA3EO15041 775 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 DTNBO60941 627 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 MBD4O95243 580 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 PDE6BP35913 854 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 EXOSC10Q01780 885 aaKnown RBP17.13■□□□□ 0.33
HDAC6-213ENST00000462730 SKOR2Q2VWA4 1001 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-213ENST00000462730 BRF1Q92994 677 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 CHAMP1Q96JM3 812 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 LRP2BPQ9P2M1 347 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 NSFL1CQ9UNZ2 370 aaKnown RBP17.13■□□□□ 0.33
HDAC6-213ENST00000462730 APPP05067 770 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 NPR1P16066 1061 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 SYT1P21579 422 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 STRBPQ96SI9 672 aaKnown RBP17.13■□□□□ 0.33
HDAC6-213ENST00000462730 ABCF2Q9UG63 623 aa17.13■□□□□ 0.33
HDAC6-213ENST00000462730 ZNF213O14771 459 aa17.12■□□□□ 0.33
HDAC6-213ENST00000462730 STX6O43752 255 aa17.12■□□□□ 0.33
HDAC6-213ENST00000462730 UFL1O94874 794 aa17.12■□□□□ 0.33
HDAC6-213ENST00000462730 PDS5AQ29RF7 1337 aaKnown RBP17.12■□□□□ 0.33
HDAC6-213ENST00000462730 GPR101Q96P66 508 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-213ENST00000462730 PDGFDQ9GZP0 370 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-213ENST00000462730 TMC4Q7Z404 712 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 GTF3C6Q969F1 213 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 ARMT1Q9H993 441 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 MAST2Q6P0Q8 1798 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 ZSCAN22P10073 491 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-213ENST00000462730 PANK2Q9BZ23 570 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 LMBRD1Q9NUN5 540 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 GGA1Q9UJY5 639 aa17.11■□□□□ 0.33
HDAC6-213ENST00000462730 ATP2B4P23634 1241 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 APOBRQ0VD83 1088 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 CHST3Q7LGC8 479 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 MASTLQ96GX5 879 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 PODXL2Q9NZ53 605 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 RAI14Q9P0K7 980 aa17.1■□□□□ 0.33
HDAC6-213ENST00000462730 MRE11P49959 708 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 CHAF1AQ13111 956 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 C15orf52Q6ZUT6 534 aaKnown RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 AGXT2Q9BYV1 514 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 NBPF3Q9H094 633 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 DUOX1Q9NRD9 1551 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 PATL2C9JE40 543 aaKnown RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 CYP7A1P22680 504 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 ALX1Q15699 326 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 ZNF804AQ7Z570 1209 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 RALYLQ86SE5 291 aaKnown RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 SP8Q8IXZ3 490 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 MB21D2Q8IYB1 491 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 LCORLQ8N3X6 602 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 NCOA7Q8NI08 942 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 EPB41L4AQ9HCS5 686 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-213ENST00000462730 ATP6V0A2Q9Y487 856 aa17.09■□□□□ 0.33
HDAC6-213ENST00000462730 ZMYM6O95789 1325 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 ZBTB22O15209 634 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 PFKFB2O60825 505 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 PRPF40AO75400 957 aaKnown RBP17.08■□□□□ 0.33
HDAC6-213ENST00000462730 ALDH1B1P30837 517 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 FOXD4L6Q3SYB3 417 aaPredicted RBP17.08■□□□□ 0.33
HDAC6-213ENST00000462730 FOXD4L3Q6VB84 417 aaPredicted RBP17.08■□□□□ 0.33
HDAC6-213ENST00000462730 TBC1D10CQ8IV04 446 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 MIGA1Q8NAN2 632 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 TBC1D16Q8TBP0 767 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 POLLQ9UGP5 575 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 MTMR6Q9Y217 621 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 JAG2Q9Y219 1238 aa17.08■□□□□ 0.33
HDAC6-213ENST00000462730 DDX49Q9Y6V7 483 aaKnown RBP17.08■□□□□ 0.33
HDAC6-213ENST00000462730 PRC1O43663 620 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 F13A1P00488 732 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 MCM5P33992 734 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 ADGRA1Q86SQ6 560 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 C2CD5Q86YS7 1000 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 IFNL3Q8IZI9 196 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 NAPBQ9H115 298 aa17.08■□□□□ 0.32
HDAC6-213ENST00000462730 ISY1Q9ULR0 285 aaKnown RBP17.08■□□□□ 0.32
HDAC6-213ENST00000462730 CCDC88AQ3V6T2 1871 aa17.07■□□□□ 0.32
HDAC6-213ENST00000462730 VPS37CA5D8V6 355 aaPredicted RBP17.07■□□□□ 0.32
HDAC6-213ENST00000462730 GNAT2P19087 354 aa17.07■□□□□ 0.32
HDAC6-213ENST00000462730 SCRN1Q12765 414 aa17.07■□□□□ 0.32
HDAC6-213ENST00000462730 KLHL40Q2TBA0 621 aa17.07■□□□□ 0.32
HDAC6-213ENST00000462730 ZNF622Q969S3 477 aaKnown RBP eCLIP17.07■□□□□ 0.321e-7■□□□□ 10.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms