RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 SETDB1Q15047 1291 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 PRRT3Q5FWE3 981 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 FMR1NBQ8N0W7 255 aaPredicted RBP6.82□□□□□ -1.32
VPS41-210ENST00000462429 CYP11A1P05108 521 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 FBXO11Q86XK2 927 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 RELL1Q8IUW5 271 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 SULF2Q8IWU5 870 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 KLHDC7BQ96G42 594 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 RSRP1Q9BUV0 290 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 EMILIN2Q9BXX0 1053 aa6.81□□□□□ -1.32
VPS41-210ENST00000462429 CNTNAP5Q8WYK1 1306 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 DEAF1O75398 565 aaPredicted RBP6.8□□□□□ -1.32
VPS41-210ENST00000462429 LMNB1P20700 586 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 CD68P34810 354 aaPredicted RBP6.8□□□□□ -1.32
VPS41-210ENST00000462429 HGSNATQ68CP4 663 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 TTBK2Q6IQ55 1244 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 ERMP1Q7Z2K6 904 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 CORO1BQ9BR76 489 aa6.8□□□□□ -1.32
VPS41-210ENST00000462429 PAGE1O75459 146 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 ELNP15502 786 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 ARNTP27540 789 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 LIG3P49916 1009 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 NLRP12P59046 1061 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 RPS26P62854 115 aaKnown RBP6.79□□□□□ -1.32
VPS41-210ENST00000462429 HNRNPUQ00839 825 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS41-210ENST00000462429 LRRC14Q15048 493 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 MAP3K11Q16584 847 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 HP1BP3Q5SSJ5 553 aaPredicted RBP6.79□□□□□ -1.32
VPS41-210ENST00000462429 PCNX4Q63HM2 1172 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 USP48Q86UV5 1035 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 METTL16Q86W50 562 aaKnown RBP6.79□□□□□ -1.32
VPS41-210ENST00000462429 NT5DC4Q86YG4 428 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 GALNT11Q8NCW6 608 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 TRIM56Q9BRZ2 755 aaKnown RBP6.79□□□□□ -1.32
VPS41-210ENST00000462429 CBX8Q9HC52 389 aa6.79□□□□□ -1.32
VPS41-210ENST00000462429 DLL1O00548 723 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 ERCC5P28715 1186 aaPredicted RBP6.78□□□□□ -1.32
VPS41-210ENST00000462429 GBP2P32456 591 aaPredicted RBP6.78□□□□□ -1.32
VPS41-210ENST00000462429 POU4F3Q15319 338 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 C9orf131Q5VYM1 1079 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 USP26Q9BXU7 913 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 KBTBD4Q9NVX7 518 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 CYP8B1Q9UNU6 501 aa6.78□□□□□ -1.32
VPS41-210ENST00000462429 FAM229AH3BQW9 127 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 TM4SF5O14894 197 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 GSTP1P09211 210 aaKnown RBP6.77□□□□□ -1.33
VPS41-210ENST00000462429 SPATA31C1P0DKV0 1188 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 BMP6P22004 513 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 MAOBP27338 520 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 FOXD4L6Q3SYB3 417 aaPredicted RBP6.77□□□□□ -1.33
VPS41-210ENST00000462429 DIEXFQ68CQ4 756 aaKnown RBP6.77□□□□□ -1.33
VPS41-210ENST00000462429 LLGL2Q6P1M3 1020 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 IGF2-ASQ6U949 168 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 FOXD4L3Q6VB84 417 aaPredicted RBP6.77□□□□□ -1.33
VPS41-210ENST00000462429 AGMOQ6ZNB7 445 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 TMEM74Q96NL1 305 aa6.77□□□□□ -1.33
VPS41-210ENST00000462429 RNF225M0QZC1 329 aaPredicted RBP6.76□□□□□ -1.33
VPS41-210ENST00000462429 ADAM11O75078 769 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 DUOXA2Q1HG44 320 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 SCARA3Q6AZY7 606 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 ALYREFQ86V81 257 aaKnown RBP6.76□□□□□ -1.33
VPS41-210ENST00000462429 ZNF654Q8IZM8 581 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 PHC3Q8NDX5 983 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 STK35Q8TDR2 534 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 KCNB2Q92953 911 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 TGIF2Q9GZN2 237 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 NRSN2Q9GZP1 204 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 MRPL18Q9H0U6 180 aaKnown RBP6.76□□□□□ -1.33
VPS41-210ENST00000462429 CCSER2Q9H7U1 834 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 COPRSQ9NQ92 184 aa6.76□□□□□ -1.33
VPS41-210ENST00000462429 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.76□□□□□ -1.33
VPS41-210ENST00000462429 LOC100289279A0A1B0GTE1 492 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 MINDY4BA8MYZ0 360 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 DDX3YO15523 660 aaKnown RBP6.75□□□□□ -1.33
VPS41-210ENST00000462429 ZNF252P-AS1Q0IIN9 211 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 PDE3AQ14432 1141 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 ZNF394Q53GI3 561 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 MAP1SQ66K74 1059 aaPredicted RBP6.75□□□□□ -1.33
VPS41-210ENST00000462429 PDZD3Q86UT5 571 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 NACC1Q96RE7 527 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 MIR1-1HGQ9H1L0 117 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 KRT82Q9NSB4 513 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 KCNK4Q9NYG8 393 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 DDX41Q9UJV9 622 aaKnown RBP6.75□□□□□ -1.33
VPS41-210ENST00000462429 TLR6Q9Y2C9 796 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 PCDHGB7Q9Y5F8 929 aa6.75□□□□□ -1.33
VPS41-210ENST00000462429 F6X3S4 739 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 TRIM37O94972 964 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 APBA3O96018 575 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 LMNB2Q03252 620 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 RAD51AP2Q09MP3 1159 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 GRIN3AQ8TCU5 1115 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 UBASH3BQ8TF42 649 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 RHOVQ96L33 236 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 ZC3H12CQ9C0D7 883 aaKnown RBP6.74□□□□□ -1.33
VPS41-210ENST00000462429 STK17AQ9UEE5 414 aa6.74□□□□□ -1.33
VPS41-210ENST00000462429 PF4P02776 101 aa6.73□□□□□ -1.33
VPS41-210ENST00000462429 TFE3P19532 575 aaPredicted RBP6.73□□□□□ -1.33
VPS41-210ENST00000462429 COL8A1P27658 744 aa6.73□□□□□ -1.33
VPS41-210ENST00000462429 EIF4A3P38919 411 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms