RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 ATF7IPQ6VMQ6 1270 aa23.61■■□□□ 1.37
VARS-220ENST00000461874 ABHD8Q96I13 439 aa23.61■■□□□ 1.37
VARS-220ENST00000461874 COPRSQ9NQ92 184 aa23.61■■□□□ 1.37
VARS-220ENST00000461874 FZD1Q9UP38 647 aa23.61■■□□□ 1.37
VARS-220ENST00000461874 PA2G4Q9UQ80 394 aaKnown RBP23.61■■□□□ 1.37
VARS-220ENST00000461874 PPP1R12BO60237 982 aaPredicted RBP23.6■■□□□ 1.37
VARS-220ENST00000461874 IL15P40933 162 aaPredicted RBP23.6■■□□□ 1.37
VARS-220ENST00000461874 TNFAIP1Q13829 316 aa23.6■■□□□ 1.37
VARS-220ENST00000461874 NBPF12Q5TAG4 269 aaPredicted RBP23.6■■□□□ 1.37
VARS-220ENST00000461874 FRAT1Q92837 279 aaPredicted RBP23.6■■□□□ 1.37
VARS-220ENST00000461874 SUGT1Q9Y2Z0 365 aa23.6■■□□□ 1.37
VARS-220ENST00000461874 SSC5DA1L4H1 1573 aa23.6■■□□□ 1.37
VARS-220ENST00000461874 ATP2B3Q16720 1220 aa23.59■■□□□ 1.37
VARS-220ENST00000461874 MRIQ9BWK5 157 aa23.59■■□□□ 1.37
VARS-220ENST00000461874 TNNQ9UQP3 1299 aa23.59■■□□□ 1.37
VARS-220ENST00000461874 TEKT1Q969V4 418 aa23.58■■□□□ 1.37
VARS-220ENST00000461874 ECM29Q5VYK3 1845 aa23.58■■□□□ 1.37
VARS-220ENST00000461874 CASP8AP2Q9UKL3 1982 aa23.58■■□□□ 1.36
VARS-220ENST00000461874 TM4SF4P48230 202 aa23.57■■□□□ 1.36
VARS-220ENST00000461874 MKRN3Q13064 507 aaKnown RBP23.57■■□□□ 1.36
VARS-220ENST00000461874 MTX1Q13505 466 aa23.57■■□□□ 1.36
VARS-220ENST00000461874 WDR66Q8TBY9 1149 aa23.57■■□□□ 1.36
VARS-220ENST00000461874 ARAP2Q8WZ64 1704 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 UNCXA6NJT0 531 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 SRGAP3O43295 1099 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 SPRYD7Q5W111 196 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 CLUAP1Q96AJ1 413 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 SLC10A4Q96EP9 437 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 ZDHHC15Q96MV8 337 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 MAST3O60307 1309 aa23.56■■□□□ 1.36
VARS-220ENST00000461874 TCP10L2B9ZVM9 353 aa23.55■■□□□ 1.36
VARS-220ENST00000461874 USP2O75604 605 aaPredicted RBP23.55■■□□□ 1.36
VARS-220ENST00000461874 CLMNQ96JQ2 1002 aa23.55■■□□□ 1.36
VARS-220ENST00000461874 TEPSINQ96N21 525 aa23.55■■□□□ 1.36
VARS-220ENST00000461874 MCOLN1Q9GZU1 580 aa23.55■■□□□ 1.36
VARS-220ENST00000461874 GNL3LQ9NVN8 582 aaKnown RBP23.55■■□□□ 1.36
VARS-220ENST00000461874 IREB2P48200 963 aaKnown RBP23.54■■□□□ 1.36
VARS-220ENST00000461874 TNNI2P48788 182 aa23.54■■□□□ 1.36
VARS-220ENST00000461874 ZKSCAN2Q63HK3 967 aa23.54■■□□□ 1.36
VARS-220ENST00000461874 APOBEC3HQ6NTF7 200 aaKnown RBP23.54■■□□□ 1.36
VARS-220ENST00000461874 HHIPL2Q6UWX4 724 aa23.54■■□□□ 1.36
VARS-220ENST00000461874 AKAP11Q9UKA4 1901 aa23.54■■□□□ 1.36
VARS-220ENST00000461874 GNAI2P04899 355 aa23.53■■□□□ 1.36
VARS-220ENST00000461874 SREBF2Q12772 1141 aa23.53■■□□□ 1.36
VARS-220ENST00000461874 DGKZQ13574 1117 aa23.53■■□□□ 1.36
VARS-220ENST00000461874 CDAN1Q8IWY9 1227 aa23.53■■□□□ 1.36
VARS-220ENST00000461874 TMEM39BQ9GZU3 492 aa23.53■■□□□ 1.36
VARS-220ENST00000461874 PHKA1P46020 1223 aa23.52■■□□□ 1.36
VARS-220ENST00000461874 SEMA3EO15041 775 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 ZBTB22O15209 634 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 ZBTB48P10074 688 aaPredicted RBP23.51■■□□□ 1.35
VARS-220ENST00000461874 ADORA1P30542 326 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 CACNB3P54284 484 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 ANKRD13AQ8IZ07 590 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 TMEM57Q8N5G2 664 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 WNK4Q96J92 1243 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.51■■□□□ 1.35
VARS-220ENST00000461874 DENND2AQ9ULE3 1009 aa23.51■■□□□ 1.35
VARS-220ENST00000461874 TBC1D8O95759 1140 aa23.5■■□□□ 1.35
VARS-220ENST00000461874 TIMM10P62072 90 aa23.5■■□□□ 1.35
VARS-220ENST00000461874 FKBP1CQ5VVH2 108 aa23.5■■□□□ 1.35
VARS-220ENST00000461874 CCDC102BQ68D86 513 aa23.5■■□□□ 1.35
VARS-220ENST00000461874 TMOD2Q9NZR1 351 aa23.5■■□□□ 1.35
VARS-220ENST00000461874 MANSC4A6NHS7 340 aaPredicted RBP23.49■■□□□ 1.35
VARS-220ENST00000461874 INHBEP58166 350 aa23.49■■□□□ 1.35
VARS-220ENST00000461874 TFCP2Q12800 502 aa23.49■■□□□ 1.35
VARS-220ENST00000461874 AKAP2Q9Y2D5 859 aa23.49■■□□□ 1.35
VARS-220ENST00000461874 ZBED9Q6R2W3 1325 aa23.49■■□□□ 1.35
VARS-220ENST00000461874 SALL1Q9NSC2 1324 aa23.49■■□□□ 1.35
VARS-220ENST00000461874 CCDC85CA6NKD9 419 aa23.48■■□□□ 1.35
VARS-220ENST00000461874 PRDX5P30044 214 aa23.48■■□□□ 1.35
VARS-220ENST00000461874 FAM83AQ86UY5 434 aa23.48■■□□□ 1.35
VARS-220ENST00000461874 PNMA6EA0A0J9YXQ4 647 aa23.47■■□□□ 1.35
VARS-220ENST00000461874 A0A1B0GUL7 405 aa23.47■■□□□ 1.35
VARS-220ENST00000461874 LDHBP07195 334 aaKnown RBP23.47■■□□□ 1.35
VARS-220ENST00000461874 DIXDC1Q155Q3 683 aa23.47■■□□□ 1.35
VARS-220ENST00000461874 CFHR5Q9BXR6 569 aa23.47■■□□□ 1.35
VARS-220ENST00000461874 DAGLAQ9Y4D2 1042 aa23.47■■□□□ 1.35
VARS-220ENST00000461874 GJA5P36382 358 aa23.46■■□□□ 1.35
VARS-220ENST00000461874 NOM1Q5C9Z4 860 aaKnown RBP23.46■■□□□ 1.35
VARS-220ENST00000461874 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.46■■□□□ 1.35
VARS-220ENST00000461874 XAGE2Q96GT9 111 aa23.46■■□□□ 1.35
VARS-220ENST00000461874 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.46■■□□□ 1.35
VARS-220ENST00000461874 ALDH1A1P00352 501 aa23.45■■□□□ 1.34
VARS-220ENST00000461874 MAP3K9P80192 1104 aa23.45■■□□□ 1.34
VARS-220ENST00000461874 RASGRF1Q13972 1273 aa23.45■■□□□ 1.34
VARS-220ENST00000461874 IFNL1Q8IU54 200 aa23.45■■□□□ 1.34
VARS-220ENST00000461874 ZNF296Q8WUU4 475 aaPredicted RBP23.45■■□□□ 1.34
VARS-220ENST00000461874 ELP3Q9H9T3 547 aa23.45■■□□□ 1.34
VARS-220ENST00000461874 PDS5AQ29RF7 1337 aaKnown RBP23.44■■□□□ 1.34
VARS-220ENST00000461874 GPR25O00155 361 aa23.44■■□□□ 1.34
VARS-220ENST00000461874 G3BP1Q13283 466 aaKnown RBP eCLIP23.44■■□□□ 1.345e-7■■■■■ 36.4
VARS-220ENST00000461874 MVPQ14764 893 aaKnown RBP23.44■■□□□ 1.34
VARS-220ENST00000461874 CDC42EP5Q6NZY7 148 aa23.44■■□□□ 1.34
VARS-220ENST00000461874 CTU1Q7Z7A3 348 aaKnown RBP23.44■■□□□ 1.34
VARS-220ENST00000461874 FTSJ3Q8IY81 847 aaKnown RBP23.44■■□□□ 1.34
VARS-220ENST00000461874 ZGPATQ8N5A5 531 aaKnown RBP23.44■■□□□ 1.34
VARS-220ENST00000461874 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.44■■□□□ 1.34
VARS-220ENST00000461874 R3HDMLQ9H3Y0 253 aa23.44■■□□□ 1.34
VARS-220ENST00000461874 OPTNQ96CV9 577 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms