RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 MRVI1Q9Y6F6 885 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 ANKRD18BA2A2Z9 1011 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 PLBD2Q8NHP8 589 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 TDO2P48775 406 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 NUP88Q99567 741 aaPredicted RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 PPP6R2O75170 966 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 DEXIO95424 95 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 TRAPPC10P48553 1259 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 TMEM266Q2M3C6 531 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 RETREG2Q8NC44 543 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 A0A1B0GUL7 405 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 PPFIA3O75145 1194 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 TNNI3KQ59H18 835 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 FPGT-TNNI3KV9GXZ4 949 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 IGHMBP2P38935 993 aaKnown RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 CYP26C1Q6V0L0 522 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 CEP128Q6ZU80 1094 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 UBE3BQ7Z3V4 1068 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 HAUS7Q99871 368 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 RNF14Q9UBS8 474 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 FBXO31Q5XUX0 539 aaPredicted RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 OTUD7AQ8TE49 926 aaPredicted RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 TAOK3Q9H2K8 898 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 SENP3Q9H4L4 574 aaPredicted RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 MON2Q7Z3U7 1717 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 EIF4A1P60842 406 aaKnown RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 TCP11L1Q9NUJ3 509 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 PNMA6EA0A0J9YXQ4 647 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 TACC1O75410 805 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC84Q86UT8 332 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 SLF2Q8IX21 1173 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 BBXQ8WY36 941 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 APPBP2Q92624 585 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 SIL1Q9H173 461 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 MYSM1Q5VVJ2 828 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 RBM43Q6ZSC3 357 aaKnown RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 PLA2G4DQ86XP0 818 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 KLF18A0A0U1RQI7 1052 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 RNMTO43148 476 aaKnown RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 SPTY2D1Q68D10 685 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 ANKRD7Q92527 254 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 LZTS2Q9BRK4 669 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 EYA2O00167 538 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 FKBP4Q02790 459 aaKnown RBP eCLIP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 ME3Q16798 604 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 FAM71BQ8TC56 605 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 ALG1Q9BT22 464 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 DNAJC5BQ9UF47 199 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 MORC2Q9Y6X9 1032 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 DNAJC21Q5F1R6 531 aaKnown RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 FBXO18Q8NFZ0 1043 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 CD2BP2O95400 341 aaKnown RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 VAV2P52735 878 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 GALNT17Q6IS24 598 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 LMBR1Q8WVP7 490 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 NECTIN1Q15223 517 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 PRC1O43663 620 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 ZNF202O95125 648 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 GBP1P32455 592 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 PDE4BQ07343 736 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 NAPGQ99747 312 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-216ENST00000461872 CUEDC2Q9H467 287 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 SNRKQ9NRH2 765 aa7.99□□□□□ -1.13
SYNE1-216ENST00000461872 EVCP57679 992 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 FANCCQ00597 558 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 GIGYF2Q6Y7W6 1299 aaKnown RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PLVAPQ9BX97 442 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 TFIP11Q9UBB9 837 aaKnown RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 KCNH3Q9ULD8 1083 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 CRB1P82279 1406 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 N4BP3O15049 544 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 SOGA3Q5TF21 947 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 TTC6Q86TZ1 520 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 IFNKQ9P0W0 207 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PLCD1P51178 756 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 GCKRQ14397 625 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 METTL24Q5JXM2 366 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 HAUS4Q9H6D7 363 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PPP2R3AQ06190 1150 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 TMEM67Q5HYA8 995 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 GADD45BO75293 160 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 RTN1Q16799 776 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 CYB5RLQ6IPT4 315 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PAXIP1Q6ZW49 1069 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PCDH11XQ9BZA7 1347 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PCDH11YQ9BZA8 1340 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 MAP4K4O95819 1239 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 VWA3BQ502W6 1294 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC91Q7Z6B0 441 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.98□□□□□ -1.131e-6■■■■■ 56.2
SYNE1-216ENST00000461872 CCDC194A0A1B0GVG4 234 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 KIF5AQ12840 1032 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 SLC39A14Q15043 492 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 PI4K2BQ8TCG2 481 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 GSDMAQ96QA5 445 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 EFCC1Q9HA90 598 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 LUC7L2Q9Y383 392 aaKnown RBP7.98□□□□□ -1.13
SYNE1-216ENST00000461872 STK36Q9NRP7 1315 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 WTAPQ15007 396 aa7.98□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC8Q9H0W5 538 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms