RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 FAM177A1Q8N128 213 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 TEKT1Q969V4 418 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 HAUS1Q96CS2 278 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 DKC1O60832 514 aaKnown RBP eCLIP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 GKAP1Q5VSY0 366 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC42Q96M95 316 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 INTS8Q75QN2 995 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 RNF10Q8N5U6 811 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 SPZ1Q9BXG8 430 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 FGFR1OP2Q9NVK5 253 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 RAI14Q9P0K7 980 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 UTP11Q9Y3A2 253 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 ARID1AO14497 2285 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 LDHCP07864 332 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 ISM2Q6H9L7 571 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 ORC3Q9UBD5 711 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 RTEL1-TNFRSF6BF6WH68 1400 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 UHRF1BP1LA0JNW5 1464 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 POLR3AO14802 1390 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 TOPBP1Q92547 1522 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 URI1O94763 535 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 MCF2L2Q86YR7 1114 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 ODF2LQ9ULJ1 636 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 YEATS2Q9ULM3 1422 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 ARHGAP4P98171 946 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 JPH4Q96JJ6 628 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 TYW1Q9NV66 732 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 BZW2Q9Y6E2 419 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 HIP1RO75146 1068 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 PAK2Q13177 524 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 NEDD9Q14511 834 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 GGT6Q6P531 493 aa5.85□□□□□ -1.47
CSMD3-204ENST00000455883 SRRM1Q8IYB3 904 aaKnown RBP5.85□□□□□ -1.47
CSMD3-204ENST00000455883 PDCD7Q8N8D1 485 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 LEO1Q8WVC0 666 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 KIFC3Q9BVG8 833 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 NUP214P35658 2090 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 GOLGA8CPA6NN73 597 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 STARD3NLO95772 234 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 SLC12A7Q9Y666 1083 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 ARHGEF5Q12774 1597 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 H0YCG3 227 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 IPO5O00410 1097 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 RAB3GAP1Q15042 981 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 SLFNL1Q499Z3 407 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 MRPS27Q92552 414 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 PPCSQ9HAB8 311 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC169A6NNP5 214 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 IGHMBP2P38935 993 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 RETREG2Q8NC44 543 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 EXOC1Q9NV70 894 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 NDE1Q9NXR1 346 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 PDZRN3Q9UPQ7 1066 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 WDR7Q9Y4E6 1490 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 PFDN6O15212 129 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 INF2Q27J81 1249 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 MUM1L1Q5H9M0 696 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 RNF187Q5TA31 235 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 NUP133Q8WUM0 1156 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 TBCAO75347 108 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 SYKP43405 635 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 TTC39AQ5SRH9 613 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 PRPF31Q8WWY3 499 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 NAPBQ9H115 298 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 GOLGA8TH3BQL2 631 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 EIF4G3O43432 1585 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 GOLGA8HP0CJ92 632 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 PLCD1P51178 756 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 ESRRGP62508 458 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 MRPS25P82663 173 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 SLFN5Q08AF3 891 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 TRIM58Q8NG06 486 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 FAM71BQ8TC56 605 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 FBXO41Q8TF61 875 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 TNPO1Q92973 898 aaKnown RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 EFHD1Q9BUP0 239 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 DBF4Q9UBU7 674 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-204ENST00000455883 SBNO2Q9Y2G9 1366 aa5.84□□□□□ -1.47
CSMD3-204ENST00000455883 FAM135BQ49AJ0 1406 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 GIPC1O14908 333 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 ZSCAN22P10073 491 aaPredicted RBP5.84□□□□□ -1.48
CSMD3-204ENST00000455883 DRP2Q13474 957 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 ARHGAP18Q8N392 663 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 IQUBQ8NA54 791 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 PRPF38AQ8NAV1 312 aaKnown RBP5.84□□□□□ -1.48
CSMD3-204ENST00000455883 FAM8A1Q9UBU6 413 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 TAOK2Q9UL54 1235 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 UBASH3AP57075 661 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 SPTBN2O15020 2390 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 CARMIL3Q8ND23 1372 aa5.84□□□□□ -1.48
CSMD3-204ENST00000455883 PHBP35232 272 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 CFAP221Q4G0U5 840 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 NOL8Q76FK4 1167 aaKnown RBP5.83□□□□□ -1.48
CSMD3-204ENST00000455883 ZNF500O60304 480 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-204ENST00000455883 NDUFAB1O14561 156 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 SART1O43290 800 aaKnown RBP5.83□□□□□ -1.48
CSMD3-204ENST00000455883 HS2ST1Q7LGA3 356 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 MCUR1Q96AQ8 359 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 ITSN1Q15811 1721 aa5.83□□□□□ -1.48
CSMD3-204ENST00000455883 RAB11FIP4Q86YS3 637 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms