RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 AOX1Q06278 1338 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 HDLBPQ00341 1268 aaKnown RBP26.34■■□□□ 1.81
HMGB3-205ENST00000455596 GNL3LQ9NVN8 582 aaKnown RBP26.34■■□□□ 1.81
HMGB3-205ENST00000455596 SUGT1Q9Y2Z0 365 aa26.34■■□□□ 1.81
HMGB3-205ENST00000455596 MAST3O60307 1309 aa26.34■■□□□ 1.81
HMGB3-205ENST00000455596 KIF23Q02241 960 aaPredicted RBP26.33■■□□□ 1.81
HMGB3-205ENST00000455596 SPDYE2Q495Y8 402 aa26.33■■□□□ 1.81
HMGB3-205ENST00000455596 WDR66Q8TBY9 1149 aa26.33■■□□□ 1.81
HMGB3-205ENST00000455596 TDRD3Q9H7E2 651 aaKnown RBP26.33■■□□□ 1.81
HMGB3-205ENST00000455596 ZNF70Q9UC06 446 aaPredicted RBP26.33■■□□□ 1.81
HMGB3-205ENST00000455596 TNFAIP1Q13829 316 aa26.32■■□□□ 1.8
HMGB3-205ENST00000455596 PRKG1Q13976 671 aa26.32■■□□□ 1.8
HMGB3-205ENST00000455596 TEKT1Q969V4 418 aa26.32■■□□□ 1.8
HMGB3-205ENST00000455596 PNMA6EA0A0J9YXQ4 647 aa26.31■■□□□ 1.8
HMGB3-205ENST00000455596 ITPRIPQ8IWB1 547 aa26.31■■□□□ 1.8
HMGB3-205ENST00000455596 MRIQ9BWK5 157 aa26.31■■□□□ 1.8
HMGB3-205ENST00000455596 TSKSQ9UJT2 592 aa26.31■■□□□ 1.8
HMGB3-205ENST00000455596 AKAP2Q9Y2D5 859 aa26.31■■□□□ 1.8
HMGB3-205ENST00000455596 SSC5DA1L4H1 1573 aa26.3■■□□□ 1.8
HMGB3-205ENST00000455596 SUPT20HL1Q3ZLR7 823 aa26.3■■□□□ 1.8
HMGB3-205ENST00000455596 ANGEL1Q9UNK9 670 aaKnown RBP26.3■■□□□ 1.8
HMGB3-205ENST00000455596 CASP8AP2Q9UKL3 1982 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 SEMA3EO15041 775 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 PHKA1P46020 1223 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 TFCP2Q12800 502 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 RASA3Q14644 834 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 REM2Q8IYK8 340 aaPredicted RBP26.29■■□□□ 1.8
HMGB3-205ENST00000455596 DENND2AQ9ULE3 1009 aa26.29■■□□□ 1.8
HMGB3-205ENST00000455596 MYH2Q9UKX2 1941 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 A0A1B0GUL7 405 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 PPP1R12BO60237 982 aaPredicted RBP26.28■■□□□ 1.8
HMGB3-205ENST00000455596 RLBP1P12271 317 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 ADORA1P30542 326 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 TIMM10P62072 90 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 CCDC102BQ68D86 513 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 ZDHHC15Q96MV8 337 aa26.28■■□□□ 1.8
HMGB3-205ENST00000455596 OTOFQ9HC10 1997 aa26.27■■□□□ 1.8
HMGB3-205ENST00000455596 TNNI2P48788 182 aa26.27■■□□□ 1.8
HMGB3-205ENST00000455596 G3BP1Q13283 466 aaKnown RBP eCLIP26.27■■□□□ 1.8
HMGB3-205ENST00000455596 NBPF12Q5TAG4 269 aaPredicted RBP26.27■■□□□ 1.8
HMGB3-205ENST00000455596 CSRNP1Q96S65 589 aa26.27■■□□□ 1.8
HMGB3-205ENST00000455596 LAMB1P07942 1786 aa26.27■■□□□ 1.8
HMGB3-205ENST00000455596 TCP10L2B9ZVM9 353 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 ZBTB22O15209 634 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 MAP3K11Q16584 847 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 LDLRAD1Q5T700 205 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 HHIPL2Q6UWX4 724 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 FZD1Q9UP38 647 aa26.26■■□□□ 1.79
HMGB3-205ENST00000455596 SALL1Q9NSC2 1324 aa26.25■■□□□ 1.79
HMGB3-205ENST00000455596 ZBTB7BO15156 539 aaPredicted RBP26.25■■□□□ 1.79
HMGB3-205ENST00000455596 ATP8B2P98198 1209 aa26.25■■□□□ 1.79
HMGB3-205ENST00000455596 XAGE2Q96GT9 111 aa26.25■■□□□ 1.79
HMGB3-205ENST00000455596 SAGE1Q9NXZ1 904 aa26.25■■□□□ 1.79
HMGB3-205ENST00000455596 AK9Q5TCS8 1911 aa26.24■■□□□ 1.79
HMGB3-205ENST00000455596 POLA2Q14181 598 aa26.24■■□□□ 1.79
HMGB3-205ENST00000455596 C1orf115Q9H7X2 142 aa26.24■■□□□ 1.79
HMGB3-205ENST00000455596 TMOD2Q9NZR1 351 aa26.24■■□□□ 1.79
HMGB3-205ENST00000455596 LDHBP07195 334 aaKnown RBP26.23■■□□□ 1.79
HMGB3-205ENST00000455596 PRDX5P30044 214 aa26.23■■□□□ 1.79
HMGB3-205ENST00000455596 MVPQ14764 893 aaKnown RBP26.23■■□□□ 1.79
HMGB3-205ENST00000455596 ZGPATQ8N5A5 531 aaKnown RBP26.23■■□□□ 1.79
HMGB3-205ENST00000455596 SSH3Q8TE77 659 aa26.23■■□□□ 1.79
HMGB3-205ENST00000455596 NEUROD6Q96NK8 337 aa26.23■■□□□ 1.79
HMGB3-205ENST00000455596 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.23■■□□□ 1.79
HMGB3-205ENST00000455596 MS4A1P11836 297 aa26.22■■□□□ 1.79
HMGB3-205ENST00000455596 IREB2P48200 963 aaKnown RBP26.22■■□□□ 1.79
HMGB3-205ENST00000455596 APOBEC3HQ6NTF7 200 aaKnown RBP26.22■■□□□ 1.79
HMGB3-205ENST00000455596 TEPSINQ96N21 525 aa26.22■■□□□ 1.79
HMGB3-205ENST00000455596 RNF186Q9NXI6 227 aa26.22■■□□□ 1.79
HMGB3-205ENST00000455596 PDS5AQ29RF7 1337 aaKnown RBP26.21■■□□□ 1.79
HMGB3-205ENST00000455596 UNCXA6NJT0 531 aa26.21■■□□□ 1.79
HMGB3-205ENST00000455596 TRPA1O75762 1119 aa26.21■■□□□ 1.79
HMGB3-205ENST00000455596 PANK1Q8TE04 598 aa26.21■■□□□ 1.79
HMGB3-205ENST00000455596 SLC10A4Q96EP9 437 aa26.21■■□□□ 1.79
HMGB3-205ENST00000455596 TMEM39BQ9GZU3 492 aa26.21■■□□□ 1.79
HMGB3-205ENST00000455596 USP2O75604 605 aaPredicted RBP26.2■■□□□ 1.78
HMGB3-205ENST00000455596 CACNB3P54284 484 aa26.2■■□□□ 1.78
HMGB3-205ENST00000455596 MKRN3Q13064 507 aaKnown RBP26.2■■□□□ 1.78
HMGB3-205ENST00000455596 RASGRF1Q13972 1273 aa26.2■■□□□ 1.78
HMGB3-205ENST00000455596 DIXDC1Q155Q3 683 aa26.19■■□□□ 1.78
HMGB3-205ENST00000455596 GORABQ5T7V8 394 aa26.19■■□□□ 1.78
HMGB3-205ENST00000455596 FKBP1CQ5VVH2 108 aa26.19■■□□□ 1.78
HMGB3-205ENST00000455596 FAM83AQ86UY5 434 aa26.19■■□□□ 1.78
HMGB3-205ENST00000455596 DAGLAQ9Y4D2 1042 aa26.19■■□□□ 1.78
HMGB3-205ENST00000455596 OS9Q13438 667 aaPredicted RBP26.18■■□□□ 1.78
HMGB3-205ENST00000455596 SPRYD7Q5W111 196 aa26.18■■□□□ 1.78
HMGB3-205ENST00000455596 ANKRD13AQ8IZ07 590 aa26.18■■□□□ 1.78
HMGB3-205ENST00000455596 CLMNQ96JQ2 1002 aa26.18■■□□□ 1.78
HMGB3-205ENST00000455596 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.18■■□□□ 1.78
HMGB3-205ENST00000455596 SURF6O75683 361 aaKnown RBP26.17■■□□□ 1.78
HMGB3-205ENST00000455596 CAPN15O75808 1086 aa26.17■■□□□ 1.78
HMGB3-205ENST00000455596 TM4SF4P48230 202 aa26.17■■□□□ 1.78
HMGB3-205ENST00000455596 SREBF2Q12772 1141 aa26.17■■□□□ 1.78
HMGB3-205ENST00000455596 CDAN1Q8IWY9 1227 aa26.17■■□□□ 1.78
HMGB3-205ENST00000455596 RCAN3Q9UKA8 241 aa26.17■■□□□ 1.78
HMGB3-205ENST00000455596 SPTY2D1Q68D10 685 aaPredicted RBP26.16■■□□□ 1.78
HMGB3-205ENST00000455596 GPR108Q9NPR9 543 aa26.16■■□□□ 1.78
HMGB3-205ENST00000455596 ABCF2Q9UG63 623 aa26.16■■□□□ 1.78
HMGB3-205ENST00000455596 ZBTB48P10074 688 aaPredicted RBP26.15■■□□□ 1.78
HMGB3-205ENST00000455596 DZIP1Q86YF9 867 aaKnown RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms