RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 CHAF1AQ13111 956 aaPredicted RBP20.18■□□□□ 0.82
GPC1-206ENST00000455111 CACNB3P54284 484 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 NOM1Q5C9Z4 860 aaKnown RBP20.17■□□□□ 0.82
GPC1-206ENST00000455111 IFNL1Q8IU54 200 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 CNKSR2Q8WXI2 1034 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 PTPN18Q99952 460 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 TMEM39BQ9GZU3 492 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 HPS5Q9UPZ3 1129 aa20.17■□□□□ 0.82
GPC1-206ENST00000455111 TCP10L2B9ZVM9 353 aa20.16■□□□□ 0.82
GPC1-206ENST00000455111 MYO1BO43795 1136 aa20.16■□□□□ 0.82
GPC1-206ENST00000455111 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.16■□□□□ 0.82
GPC1-206ENST00000455111 SLC10A4Q96EP9 437 aa20.16■□□□□ 0.82
GPC1-206ENST00000455111 SMC4Q9NTJ3 1288 aa20.16■□□□□ 0.82
GPC1-206ENST00000455111 NOB1Q9ULX3 412 aaKnown RBP20.16■□□□□ 0.82
GPC1-206ENST00000455111 EYA2O00167 538 aa20.15■□□□□ 0.82
GPC1-206ENST00000455111 SREBF2Q12772 1141 aa20.15■□□□□ 0.82
GPC1-206ENST00000455111 ZSWIM8A7E2V4 1837 aa20.15■□□□□ 0.82
GPC1-206ENST00000455111 KIF16BQ96L93 1317 aa20.14■□□□□ 0.81
GPC1-206ENST00000455111 PPP1R12BO60237 982 aaPredicted RBP20.14■□□□□ 0.81
GPC1-206ENST00000455111 ZBTB48P10074 688 aaPredicted RBP20.14■□□□□ 0.81
GPC1-206ENST00000455111 SUPT20HL1Q3ZLR7 823 aa20.14■□□□□ 0.81
GPC1-206ENST00000455111 APOBEC3HQ6NTF7 200 aaKnown RBP20.14■□□□□ 0.81
GPC1-206ENST00000455111 TNNQ9UQP3 1299 aa20.14■□□□□ 0.81
GPC1-206ENST00000455111 TESPA1A2RU30 521 aaPredicted RBP20.13■□□□□ 0.81
GPC1-206ENST00000455111 MANSC4A6NHS7 340 aaPredicted RBP20.13■□□□□ 0.81
GPC1-206ENST00000455111 PUM3Q15397 648 aaKnown RBP20.13■□□□□ 0.81
GPC1-206ENST00000455111 MS4A4AQ96JQ5 239 aa20.13■□□□□ 0.81
GPC1-206ENST00000455111 ELP3Q9H9T3 547 aa20.13■□□□□ 0.81
GPC1-206ENST00000455111 UNCXA6NJT0 531 aa20.12■□□□□ 0.81
GPC1-206ENST00000455111 HDLBPQ00341 1268 aaKnown RBP20.12■□□□□ 0.81
GPC1-206ENST00000455111 ANKRD13AQ8IZ07 590 aa20.12■□□□□ 0.81
GPC1-206ENST00000455111 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.12■□□□□ 0.81
GPC1-206ENST00000455111 PA2G4Q9UQ80 394 aaKnown RBP20.12■□□□□ 0.81
GPC1-206ENST00000455111 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.12■□□□□ 0.81
GPC1-206ENST00000455111 IREB2P48200 963 aaKnown RBP20.11■□□□□ 0.81
GPC1-206ENST00000455111 CAVIN4Q5BKX8 364 aa20.11■□□□□ 0.81
GPC1-206ENST00000455111 ZDHHC15Q96MV8 337 aa20.11■□□□□ 0.81
GPC1-206ENST00000455111 MEIS3Q99687 375 aa20.11■□□□□ 0.81
GPC1-206ENST00000455111 LRRFIP2Q9Y608 721 aaKnown RBP20.11■□□□□ 0.81
GPC1-206ENST00000455111 FKTNO75072 461 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 RARSP54136 660 aaKnown RBP20.1■□□□□ 0.81
GPC1-206ENST00000455111 VGLL4Q14135 290 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 VPS37DQ86XT2 251 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 TBC1D22AQ8WUA7 517 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 OPTNQ96CV9 577 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 SIL1Q9H173 461 aa20.1■□□□□ 0.81
GPC1-206ENST00000455111 CRHR2Q13324 411 aa20.09■□□□□ 0.81
GPC1-206ENST00000455111 TNFAIP1Q13829 316 aa20.09■□□□□ 0.81
GPC1-206ENST00000455111 LPIN2Q92539 896 aa20.09■□□□□ 0.81
GPC1-206ENST00000455111 TEKT1Q969V4 418 aa20.09■□□□□ 0.81
GPC1-206ENST00000455111 MRIQ9BWK5 157 aa20.09■□□□□ 0.81
GPC1-206ENST00000455111 CENPFP49454 3210 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 CCER2I3L3R5 266 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 IFIT1P09914 478 aaKnown RBP20.08■□□□□ 0.81
GPC1-206ENST00000455111 ADORA1P30542 326 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 INHBEP58166 350 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 BRI3BPQ8WY22 251 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 SNCAIPQ9Y6H5 919 aa20.08■□□□□ 0.81
GPC1-206ENST00000455111 MYH2Q9UKX2 1941 aa20.08■□□□□ 0.8
GPC1-206ENST00000455111 CIAO1O76071 339 aa20.07■□□□□ 0.8
GPC1-206ENST00000455111 UBTFL1P0CB47 393 aaPredicted RBP20.07■□□□□ 0.8
GPC1-206ENST00000455111 PRDX5P30044 214 aa20.07■□□□□ 0.8
GPC1-206ENST00000455111 DIXDC1Q155Q3 683 aa20.07■□□□□ 0.8
GPC1-206ENST00000455111 FBXO46Q6PJ61 603 aaPredicted RBP20.07■□□□□ 0.8
GPC1-206ENST00000455111 RBBP6Q7Z6E9 1792 aaKnown RBP20.06■□□□□ 0.8
GPC1-206ENST00000455111 FRAT2O75474 233 aaPredicted RBP20.06■□□□□ 0.8
GPC1-206ENST00000455111 ALDH1A1P00352 501 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 CT47B1P0C2W7 299 aaPredicted RBP20.06■□□□□ 0.8
GPC1-206ENST00000455111 SLC5A1P13866 664 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 PHKA1P46020 1223 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 MAP3K9P80192 1104 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 PKN2Q16513 984 aaKnown RBP20.06■□□□□ 0.8
GPC1-206ENST00000455111 HHIPL2Q6UWX4 724 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 OTOP1Q7RTM1 612 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 DAGLAQ9Y4D2 1042 aa20.06■□□□□ 0.8
GPC1-206ENST00000455111 BRCA2P51587 3418 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 NFIAQ12857 509 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 ATP2B3Q16720 1220 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 INTS3Q68E01 1043 aaKnown RBP20.05■□□□□ 0.8
GPC1-206ENST00000455111 FAM83AQ86UY5 434 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 FAM43AQ8N2R8 423 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 CD99L2Q8TCZ2 262 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 ZKSCAN4Q969J2 545 aaPredicted RBP20.05■□□□□ 0.8
GPC1-206ENST00000455111 API5Q9BZZ5 524 aaKnown RBP20.05■□□□□ 0.8
GPC1-206ENST00000455111 COPRSQ9NQ92 184 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 SUGT1Q9Y2Z0 365 aa20.05■□□□□ 0.8
GPC1-206ENST00000455111 RPAP1Q9BWH6 1393 aaPredicted RBP20.05■□□□□ 0.8
GPC1-206ENST00000455111 DOCK2Q92608 1830 aa20.04■□□□□ 0.8
GPC1-206ENST00000455111 TNNI2P48788 182 aa20.04■□□□□ 0.8
GPC1-206ENST00000455111 CDC42EP5Q6NZY7 148 aa20.04■□□□□ 0.8
GPC1-206ENST00000455111 ZFPM1Q8IX07 1006 aa20.04■□□□□ 0.8
GPC1-206ENST00000455111 FBXO3Q9UK99 471 aa20.04■□□□□ 0.8
GPC1-206ENST00000455111 SPDYE5A6NIY4 337 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 FKBP1CQ5VVH2 108 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 OTUD5Q96G74 571 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 FAM198AQ9UFP1 575 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 TRIM17Q9Y577 477 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 RFX7Q2KHR2 1363 aa20.03■□□□□ 0.8
GPC1-206ENST00000455111 BCAR3O75815 825 aa20.02■□□□□ 0.8
GPC1-206ENST00000455111 SLURP2P0DP57 97 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms