RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 NMIQ13287 307 aaPredicted RBP13.31□□□□□ -0.28
SCN9A-205ENST00000454569 EYA3Q99504 573 aa13.31□□□□□ -0.28
SCN9A-205ENST00000454569 COA1Q9GZY4 146 aa13.31□□□□□ -0.28
SCN9A-205ENST00000454569 DENND2AQ9ULE3 1009 aa13.31□□□□□ -0.28
SCN9A-205ENST00000454569 PPIP5K2O43314 1243 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 ECE2O60344 883 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 PRDX5P30044 214 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 GTF2IP78347 998 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 CWC27Q6UX04 472 aaKnown RBP13.3□□□□□ -0.28
SCN9A-205ENST00000454569 CCDC129Q6ZRS4 1044 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 CERS5Q8N5B7 392 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 ABCF2Q9UG63 623 aa13.3□□□□□ -0.28
SCN9A-205ENST00000454569 TCRBV5S4A2TA0A5A2 114 aa13.29□□□□□ -0.28
SCN9A-205ENST00000454569 SEMA3EO15041 775 aa13.29□□□□□ -0.28
SCN9A-205ENST00000454569 IDH1O75874 414 aaKnown RBP13.29□□□□□ -0.28
SCN9A-205ENST00000454569 ADGRA1Q86SQ6 560 aa13.29□□□□□ -0.28
SCN9A-205ENST00000454569 ESYT1Q9BSJ8 1104 aa13.29□□□□□ -0.28
SCN9A-205ENST00000454569 CDK5RAP2Q96SN8 1893 aa13.29□□□□□ -0.28
SCN9A-205ENST00000454569 RNF113AO15541 343 aaKnown RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 ADD2P35612 726 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 ZNF589Q86UQ0 364 aaPredicted RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 SUPT20HQ8NEM7 779 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 OSBP2Q969R2 916 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 FAM205AQ6ZU69 1335 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 MAST2Q6P0Q8 1798 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 M0R2C6 588 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 PDE6AP16499 860 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 IARSP41252 1262 aaKnown RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 MFAP1P55081 439 aaKnown RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 SLC9C2Q5TAH2 1124 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 SOGA3Q5TF21 947 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 TTLL5Q6EMB2 1281 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 LARGE2Q8N3Y3 721 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 MAGEB6Q8N7X4 407 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 FBXW7Q969H0 707 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 PUS7LQ9H0K6 701 aaKnown RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 TAOK3Q9H2K8 898 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 LRP2BPQ9P2M1 347 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
SCN9A-205ENST00000454569 STK24Q9Y6E0 443 aa13.28□□□□□ -0.28
SCN9A-205ENST00000454569 PDS5AQ29RF7 1337 aaKnown RBP13.27□□□□□ -0.28
SCN9A-205ENST00000454569 ZNF532Q9HCE3 1301 aa13.27□□□□□ -0.28
SCN9A-205ENST00000454569 SGSM2O43147 1006 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 TTF1Q15361 905 aaPredicted RBP13.27□□□□□ -0.29
SCN9A-205ENST00000454569 GRIPAP1Q4V328 841 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 ZMYM1Q5SVZ6 1142 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 ARHGAP27Q6ZUM4 889 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 DIAPH3Q9NSV4 1193 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 SALL1Q9NSC2 1324 aa13.27□□□□□ -0.29
SCN9A-205ENST00000454569 BAZ2AQ9UIF9 1905 aaKnown RBP13.27□□□□□ -0.29
SCN9A-205ENST00000454569 G3V3G9 751 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 MECOMQ03112 1051 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 PTH1RQ03431 593 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 PODNQ7Z5L7 613 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 NSUN4Q96CB9 384 aaKnown RBP13.26□□□□□ -0.29
SCN9A-205ENST00000454569 RAI14Q9P0K7 980 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 MAST3O60307 1309 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 RFX7Q2KHR2 1363 aa13.26□□□□□ -0.29
SCN9A-205ENST00000454569 RAD17O75943 681 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 DIXDC1Q155Q3 683 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 MFSD14BQ5SR56 506 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 DACT2Q5SW24 774 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 VPS53Q5VIR6 699 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 ERICH6Q7L0X2 663 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 WDR66Q8TBY9 1149 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 LTBP3Q9NS15 1303 aa13.25□□□□□ -0.29
SCN9A-205ENST00000454569 F8W031 263 aaPredicted RBP13.24□□□□□ -0.29
SCN9A-205ENST00000454569 FOXP2O15409 715 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 MAP3K12Q12852 859 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 PCDHAC2Q9Y5I4 1007 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 USP17L3A6NCW0 530 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 USP17L4A6NCW7 530 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 PSMD14O00487 310 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 CYP7A1P22680 504 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 DYNLL1P63167 89 aaKnown RBP13.24□□□□□ -0.29
SCN9A-205ENST00000454569 UBE3CQ15386 1083 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 MCMDC2Q4G0Z9 681 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 USP17L1Q7RTZ2 530 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 MIGA1Q8NAN2 632 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 APPBP2Q92624 585 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 USP26Q9BXU7 913 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 LSG1Q9H089 658 aaKnown RBP13.24□□□□□ -0.29
SCN9A-205ENST00000454569 VPS33BQ9H267 617 aa13.24□□□□□ -0.29
SCN9A-205ENST00000454569 TSPYL2Q9H2G4 693 aaPredicted RBP13.24□□□□□ -0.29
SCN9A-205ENST00000454569 ECM29Q5VYK3 1845 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 TIAM2Q8IVF5 1701 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 LDHBP07195 334 aaKnown RBP13.23□□□□□ -0.29
SCN9A-205ENST00000454569 ZFYP08048 801 aaPredicted RBP13.23□□□□□ -0.29
SCN9A-205ENST00000454569 CXCL9Q07325 125 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 STRIP1Q5VSL9 837 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.23□□□□□ -0.29
SCN9A-205ENST00000454569 HELLSQ9NRZ9 838 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 ZNRF3Q9ULT6 936 aa13.23□□□□□ -0.29
SCN9A-205ENST00000454569 SHTN1A0MZ66 631 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 HIP1O00291 1037 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 PRKAB2O43741 272 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 SCNN1DP51172 638 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 NAA16Q6N069 864 aaPredicted RBP13.22□□□□□ -0.29
SCN9A-205ENST00000454569 KIAA0825Q8IV33 1275 aa13.22□□□□□ -0.29
SCN9A-205ENST00000454569 NIM1KQ8IY84 436 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms