RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	PAPPA2	Q9BXP8	1791 aa		10.92	□□□□□ -0.66
RFX3-209	ENST00000451859	MYO3B	Q8WXR4	1341 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	CTCF	P49711	727 aa	Predicted RBP	10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	LBX1	P52954	281 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	NBPF9	Q3BBW0	867 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	ALDH1L2	Q3SY69	923 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	ZNF804A	Q7Z570	1209 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	OGFOD1	Q8N543	542 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	KLHDC4	Q8TBB5	520 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	CDCA5	Q96FF9	252 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	GBA2	Q9HCG7	927 aa	Predicted RBP	10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	WBP1L	Q9NX94	342 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	TSKS	Q9UJT2	592 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	AK9	Q5TCS8	1911 aa		10.91	□□□□□ -0.66
RFX3-209	ENST00000451859	UTY	O14607	1347 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	IRS2	Q9Y4H2	1338 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	MAP2K1	Q02750	393 aa	Predicted RBP	10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	PRAMEF18	Q5VWM3	479 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	ANKRD44	Q8N8A2	993 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	C2orf69	Q8N8R5	385 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	BEGAIN	Q9BUH8	593 aa		10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	NOB1	Q9ULX3	412 aa	Known RBP	10.9	□□□□□ -0.66
RFX3-209	ENST00000451859	HSPA8	P11142	646 aa	Known RBP	10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	GYG1	P46976	350 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	LRRC24	Q50LG9	513 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	METTL24	Q5JXM2	366 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	DIEXF	Q68CQ4	756 aa	Known RBP	10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	TRMT2A	Q8IZ69	625 aa	Known RBP	10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	CERS5	Q8N5B7	392 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	USP44	Q9H0E7	712 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	HDAC9	Q9UKV0	1011 aa		10.89	□□□□□ -0.67
RFX3-209	ENST00000451859	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	WNT10B	O00744	389 aa		10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	ZNF157	P51786	506 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	TTLL12	Q14166	644 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	RABL6	Q3YEC7	729 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	ZFP91	Q96JP5	570 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	ZIC5	Q96T25	663 aa		10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	PCDHAC2	Q9Y5I4	1007 aa		10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	OTOF	Q9HC10	1997 aa		10.88	□□□□□ -0.67
RFX3-209	ENST00000451859	MROH5	Q6ZUA9	1318 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	PITPNM2	Q9BZ72	1349 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	UBTFL1	P0CB47	393 aa	Predicted RBP	10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	RBM5	P52756	815 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	PRKG1	Q13976	671 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	RGMB	Q6NW40	437 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	C15orf52	Q6ZUT6	534 aa	Known RBP	10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	MOB2	Q70IA6	237 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	HHIPL1	Q96JK4	782 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	RIPOR2	Q9Y4F9	1068 aa		10.87	□□□□□ -0.67
RFX3-209	ENST00000451859	CLRN2	A0PK11	232 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	RIOK3	O14730	519 aa	Known RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	CT47B1	P0C2W7	299 aa	Predicted RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	IL1R1	P14778	569 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	HIBADH	P31937	336 aa	Known RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	MAP2K2	P36507	400 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	RARS	P54136	660 aa	Known RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	CHAF1A	Q13111	956 aa	Predicted RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	UBE4A	Q14139	1066 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	DLGAP5	Q15398	846 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	POTEE	Q6S8J3	1075 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	VPS37D	Q86XT2	251 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	API5	Q9BZZ5	524 aa	Known RBP	10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	SIL1	Q9H173	461 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	PRDM10	Q9NQV6	1147 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	MYH2	Q9UKX2	1941 aa		10.86	□□□□□ -0.67
RFX3-209	ENST00000451859	FAM155A	B1AL88	458 aa	Predicted RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	UBE2Q2L	H0YL09	131 aa		10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	FRAT2	O75474	233 aa	Predicted RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	NOG	Q13253	232 aa		10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	CFAP100	Q494V2	611 aa		10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	MFSD14B	Q5SR56	506 aa		10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	FRAT1	Q92837	279 aa	Predicted RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	FAM84B	Q96KN1	310 aa	Predicted RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	VEZT	Q9HBM0	779 aa		10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	LRRFIP2	Q9Y608	721 aa	Known RBP	10.85	□□□□□ -0.67
RFX3-209	ENST00000451859	AOX1	Q06278	1338 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	KIF16B	Q96L93	1317 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	PDE8B	O95263	885 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	NF2	P35240	595 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	BRPF1	P55201	1214 aa	Predicted RBP	10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	KIF23	Q02241	960 aa	Predicted RBP	10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	TDRD7	Q8NHU6	1098 aa	Known RBP	10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	CCDC102A	Q96A19	550 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	MEIS3	Q99687	375 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	TTF2	Q9UNY4	1162 aa	Known RBP	10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	FZD1	Q9UP38	647 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	TNN	Q9UQP3	1299 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	FAM205A	Q6ZU69	1335 aa		10.84	□□□□□ -0.67
RFX3-209	ENST00000451859	EYA2	O00167	538 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	BCAR3	O75815	825 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	SLC10A3	P09131	477 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	IFIT1	P09914	478 aa	Known RBP	10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	RFX5	P48382	616 aa	Predicted RBP	10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	BCAM	P50895	628 aa		10.83	□□□□□ -0.68
RFX3-209	ENST00000451859	CAVIN4	Q5BKX8	364 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms