RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 METP08581 1390 aa8.71□□□□□ -1.02
USP49-205ENST00000448078 BCL9LQ86UU0 1499 aa8.7□□□□□ -1.02
USP49-205ENST00000448078 TNFRSF10BO14763 440 aa8.7□□□□□ -1.02
USP49-205ENST00000448078 TARSP26639 723 aaKnown RBP8.7□□□□□ -1.02
USP49-205ENST00000448078 DNM1Q05193 864 aaKnown RBP8.7□□□□□ -1.02
USP49-205ENST00000448078 ZNF211Q13398 564 aaPredicted RBP8.7□□□□□ -1.02
USP49-205ENST00000448078 NOM1Q5C9Z4 860 aaKnown RBP8.7□□□□□ -1.02
USP49-205ENST00000448078 EFCC1Q9HA90 598 aa8.7□□□□□ -1.02
USP49-205ENST00000448078 KLF15Q9UIH9 416 aa8.7□□□□□ -1.02
USP49-205ENST00000448078 TMEM131LA2VDJ0 1609 aa8.69□□□□□ -1.02
USP49-205ENST00000448078 OPLAHO14841 1288 aa8.69□□□□□ -1.02
USP49-205ENST00000448078 XPCQ01831 940 aaPredicted RBP8.69□□□□□ -1.02
USP49-205ENST00000448078 C8orf34Q49A92 452 aa8.69□□□□□ -1.02
USP49-205ENST00000448078 KRT28Q7Z3Y7 464 aa8.69□□□□□ -1.02
USP49-205ENST00000448078 ATCAYQ86WG3 371 aa8.69□□□□□ -1.02
USP49-205ENST00000448078 FAM13AO94988 1023 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 PSAPP07602 524 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 MPSTP25325 297 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 MLLT1Q03111 559 aaPredicted RBP8.68□□□□□ -1.02
USP49-205ENST00000448078 PCSK7Q16549 785 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 TTC39BQ5VTQ0 682 aaPredicted RBP8.68□□□□□ -1.02
USP49-205ENST00000448078 ALKBH2Q6NS38 261 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 MICALL1Q8N3F8 863 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 DNAJB12Q9NXW2 375 aaKnown RBP8.68□□□□□ -1.02
USP49-205ENST00000448078 RPGRIP1LQ68CZ1 1315 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 NHSL1Q5SYE7 1610 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 PTPN23Q9H3S7 1636 aa8.68□□□□□ -1.02
USP49-205ENST00000448078 HFM1A2PYH4 1435 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 CPB1P15086 417 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 KANK3Q6NY19 840 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 DHX32Q7L7V1 743 aaKnown RBP8.67□□□□□ -1.02
USP49-205ENST00000448078 FAM35AQ86V20 835 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 GLYCTKQ8IVS8 523 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 CCER1Q8TC90 406 aaPredicted RBP8.67□□□□□ -1.02
USP49-205ENST00000448078 EDEM1Q92611 657 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 TNFRSF25Q93038 417 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 NUDT16Q96DE0 195 aaKnown RBP8.67□□□□□ -1.02
USP49-205ENST00000448078 RBSNQ9H1K0 784 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 SLC6A14Q9UN76 642 aa8.67□□□□□ -1.02
USP49-205ENST00000448078 RALGAPBQ86X10 1494 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 SPATA31A3Q5VYP0 1347 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 H3BRB1 525 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 M0R082 166 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 ZBTB39O15060 712 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 SNRPNP63162 240 aaKnown RBP8.66□□□□□ -1.02
USP49-205ENST00000448078 ELMSAN1Q6PJG2 1045 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 FAM196AQ6ZSG2 479 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 ZNF417Q8TAU3 575 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 NUDT8Q8WV74 236 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 ZNF587Q96SQ5 575 aaPredicted RBP8.66□□□□□ -1.02
USP49-205ENST00000448078 TUT1Q9H6E5 874 aaKnown RBP8.66□□□□□ -1.02
USP49-205ENST00000448078 SPON1Q9HCB6 807 aa8.66□□□□□ -1.02
USP49-205ENST00000448078 EP400Q96L91 3159 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 ADARB2-AS1A8MUL3 147 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 GNB5O14775 395 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 RPLP1P05386 114 aaKnown RBP8.65□□□□□ -1.02
USP49-205ENST00000448078 EIF2AK2P19525 551 aaKnown RBP8.65□□□□□ -1.02
USP49-205ENST00000448078 EIF1AXP47813 144 aaKnown RBP8.65□□□□□ -1.02
USP49-205ENST00000448078 FKBP4Q02790 459 aaKnown RBP eCLIP8.65□□□□□ -1.02
USP49-205ENST00000448078 HFE2Q6ZVN8 426 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 ZNF438Q7Z4V0 828 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 NLRP13Q86W25 1043 aa8.65□□□□□ -1.02
USP49-205ENST00000448078 NSUN5Q96P11 429 aaKnown RBP8.65□□□□□ -1.02
USP49-205ENST00000448078 JPH1Q9HDC5 661 aaPredicted RBP8.65□□□□□ -1.02
USP49-205ENST00000448078 GCC2Q8IWJ2 1684 aa8.65□□□□□ -1.03
USP49-205ENST00000448078 ADGRL2O95490 1459 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 LOC105371045A0A1W2PR82 267 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 RGS9O75916 674 aaPredicted RBP8.64□□□□□ -1.03
USP49-205ENST00000448078 APBA3O96018 575 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 GHRHP01286 108 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 SERPINB4P48594 390 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 PLAURQ03405 335 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 FAM26DQ5JW98 314 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 PHLDB3Q6NSJ2 640 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 C11orf16Q9NQ32 467 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 NOP53Q9NZM5 478 aaKnown RBP8.64□□□□□ -1.03
USP49-205ENST00000448078 ZFATQ9P243 1243 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 STK26Q9P289 416 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 MYOM2P54296 1465 aa8.64□□□□□ -1.03
USP49-205ENST00000448078 LRP5O75197 1615 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 SPDYE3A6NKU9 549 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 LILRB5O75023 590 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 GDF11O95390 407 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 GRNP28799 593 aaKnown RBP8.63□□□□□ -1.03
USP49-205ENST00000448078 ITGAEP38570 1179 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 PDE3BQ13370 1112 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 PSAPL1Q6NUJ1 521 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 TMEM151AQ8N4L1 468 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 TMC1Q8TDI8 760 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 SPACA7Q96KW9 195 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 BIN2Q9UBW5 565 aaPredicted RBP8.63□□□□□ -1.03
USP49-205ENST00000448078 KCNMB2Q9Y691 235 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 UNC13BO14795 1591 aa8.63□□□□□ -1.03
USP49-205ENST00000448078 ROBO2Q9HCK4 1378 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 FAM83GA6ND36 823 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 KCNQ2O43526 872 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 MMP20O60882 483 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 MAP3K6O95382 1288 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 RASSF7Q02833 373 aa8.62□□□□□ -1.03
USP49-205ENST00000448078 TRIP4Q15650 581 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms