RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MAP3K11Q16584 847 aa25.89■■□□□ 1.74
SDC1-205ENST00000447124 COPRSQ9NQ92 184 aa25.89■■□□□ 1.74
SDC1-205ENST00000447124 CEP126Q9P2H0 1117 aa25.89■■□□□ 1.74
SDC1-205ENST00000447124 COL1A1P02452 1464 aaPredicted RBP25.89■■□□□ 1.73
SDC1-205ENST00000447124 SSC5DA1L4H1 1573 aa25.89■■□□□ 1.73
SDC1-205ENST00000447124 IPO8O15397 1037 aaKnown RBP25.88■■□□□ 1.73
SDC1-205ENST00000447124 FRAT1Q92837 279 aaPredicted RBP25.88■■□□□ 1.73
SDC1-205ENST00000447124 USP2O75604 605 aaPredicted RBP25.87■■□□□ 1.73
SDC1-205ENST00000447124 HDLBPQ00341 1268 aaKnown RBP25.87■■□□□ 1.73
SDC1-205ENST00000447124 SUPT20HL1Q3ZLR7 823 aa25.87■■□□□ 1.73
SDC1-205ENST00000447124 ATF7IPQ6VMQ6 1270 aa25.87■■□□□ 1.73
SDC1-205ENST00000447124 MRIQ9BWK5 157 aa25.87■■□□□ 1.73
SDC1-205ENST00000447124 GNAI3P08754 354 aa25.86■■□□□ 1.73
SDC1-205ENST00000447124 IL15P40933 162 aaPredicted RBP25.86■■□□□ 1.73
SDC1-205ENST00000447124 TM4SF4P48230 202 aa25.86■■□□□ 1.73
SDC1-205ENST00000447124 ATP2B3Q16720 1220 aa25.86■■□□□ 1.73
SDC1-205ENST00000447124 CDAN1Q8IWY9 1227 aa25.86■■□□□ 1.73
SDC1-205ENST00000447124 CLUAP1Q96AJ1 413 aa25.86■■□□□ 1.73
SDC1-205ENST00000447124 PPP1R12BO60237 982 aaPredicted RBP25.85■■□□□ 1.73
SDC1-205ENST00000447124 SPRYD7Q5W111 196 aa25.85■■□□□ 1.73
SDC1-205ENST00000447124 CLMNQ96JQ2 1002 aa25.85■■□□□ 1.73
SDC1-205ENST00000447124 TEPSINQ96N21 525 aa25.85■■□□□ 1.73
SDC1-205ENST00000447124 MCOLN1Q9GZU1 580 aa25.85■■□□□ 1.73
SDC1-205ENST00000447124 ECM29Q5VYK3 1845 aa25.84■■□□□ 1.73
SDC1-205ENST00000447124 TCP10L2B9ZVM9 353 aa25.84■■□□□ 1.73
SDC1-205ENST00000447124 SLC10A4Q96EP9 437 aa25.84■■□□□ 1.73
SDC1-205ENST00000447124 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.84■■□□□ 1.73
SDC1-205ENST00000447124 AKAP11Q9UKA4 1901 aa25.83■■□□□ 1.73
SDC1-205ENST00000447124 MTX1Q13505 466 aa25.83■■□□□ 1.73
SDC1-205ENST00000447124 APOBEC3HQ6NTF7 200 aaKnown RBP25.83■■□□□ 1.73
SDC1-205ENST00000447124 TEKT1Q969V4 418 aa25.83■■□□□ 1.73
SDC1-205ENST00000447124 SUGT1Q9Y2Z0 365 aa25.83■■□□□ 1.73
SDC1-205ENST00000447124 SRGAP3O43295 1099 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 ADORA1P30542 326 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 CACNB3P54284 484 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 WDR66Q8TBY9 1149 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 ZDHHC15Q96MV8 337 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 TMEM39BQ9GZU3 492 aa25.82■■□□□ 1.72
SDC1-205ENST00000447124 TBC1D8O95759 1140 aa25.81■■□□□ 1.72
SDC1-205ENST00000447124 PHKA1P46020 1223 aa25.81■■□□□ 1.72
SDC1-205ENST00000447124 TIMM10P62072 90 aa25.81■■□□□ 1.72
SDC1-205ENST00000447124 DGKZQ13574 1117 aa25.81■■□□□ 1.72
SDC1-205ENST00000447124 TNFAIP1Q13829 316 aa25.81■■□□□ 1.72
SDC1-205ENST00000447124 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.81■■□□□ 1.72
SDC1-205ENST00000447124 HHIPL2Q6UWX4 724 aa25.8■■□□□ 1.72
SDC1-205ENST00000447124 TMEM57Q8N5G2 664 aa25.8■■□□□ 1.72
SDC1-205ENST00000447124 UNCXA6NJT0 531 aa25.79■■□□□ 1.72
SDC1-205ENST00000447124 ZKSCAN2Q63HK3 967 aa25.79■■□□□ 1.72
SDC1-205ENST00000447124 WNK4Q96J92 1243 aa25.79■■□□□ 1.72
SDC1-205ENST00000447124 ARAP2Q8WZ64 1704 aa25.79■■□□□ 1.72
SDC1-205ENST00000447124 GNAI2P04899 355 aa25.78■■□□□ 1.72
SDC1-205ENST00000447124 GJA5P36382 358 aa25.78■■□□□ 1.72
SDC1-205ENST00000447124 IREB2P48200 963 aaKnown RBP25.78■■□□□ 1.72
SDC1-205ENST00000447124 TFCP2Q12800 502 aa25.78■■□□□ 1.72
SDC1-205ENST00000447124 R3HDMLQ9H3Y0 253 aa25.78■■□□□ 1.72
SDC1-205ENST00000447124 PNMA6EA0A0J9YXQ4 647 aa25.77■■□□□ 1.72
SDC1-205ENST00000447124 CCDC102BQ68D86 513 aa25.77■■□□□ 1.72
SDC1-205ENST00000447124 GNL3LQ9NVN8 582 aaKnown RBP25.77■■□□□ 1.72
SDC1-205ENST00000447124 CCDC85CA6NKD9 419 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 PRDX5P30044 214 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 TNNI2P48788 182 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 SREBF2Q12772 1141 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 ANKRD13AQ8IZ07 590 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 MAST3O60307 1309 aa25.76■■□□□ 1.71
SDC1-205ENST00000447124 ZBTB22O15209 634 aa25.75■■□□□ 1.71
SDC1-205ENST00000447124 DIXDC1Q155Q3 683 aa25.75■■□□□ 1.71
SDC1-205ENST00000447124 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.75■■□□□ 1.71
SDC1-205ENST00000447124 DENND2AQ9ULE3 1009 aa25.75■■□□□ 1.71
SDC1-205ENST00000447124 A0A1B0GUL7 405 aa25.74■■□□□ 1.71
SDC1-205ENST00000447124 MANSC4A6NHS7 340 aaPredicted RBP25.74■■□□□ 1.71
SDC1-205ENST00000447124 ZBTB48P10074 688 aaPredicted RBP25.74■■□□□ 1.71
SDC1-205ENST00000447124 XAGE2Q96GT9 111 aa25.74■■□□□ 1.71
SDC1-205ENST00000447124 DAGLAQ9Y4D2 1042 aa25.74■■□□□ 1.71
SDC1-205ENST00000447124 SALL1Q9NSC2 1324 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 SEMA3EO15041 775 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 MAP3K9P80192 1104 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 FKBP1CQ5VVH2 108 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 FAM83AQ86UY5 434 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 ZNF296Q8WUU4 475 aaPredicted RBP25.73■■□□□ 1.71
SDC1-205ENST00000447124 ELP3Q9H9T3 547 aa25.73■■□□□ 1.71
SDC1-205ENST00000447124 GPR25O00155 361 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 LDHBP07195 334 aaKnown RBP25.72■■□□□ 1.71
SDC1-205ENST00000447124 RLBP1P12271 317 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 INHBEP58166 350 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 CDC42EP5Q6NZY7 148 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 IFNL1Q8IU54 200 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 CFHR5Q9BXR6 569 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 AKAP2Q9Y2D5 859 aa25.72■■□□□ 1.71
SDC1-205ENST00000447124 ZBED9Q6R2W3 1325 aa25.71■■□□□ 1.71
SDC1-205ENST00000447124 IGF2BP3O00425 579 aaKnown RBP eCLIP25.71■■□□□ 1.71
SDC1-205ENST00000447124 RASGRF1Q13972 1273 aa25.71■■□□□ 1.71
SDC1-205ENST00000447124 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.71■■□□□ 1.71
SDC1-205ENST00000447124 CNKSR2Q8WXI2 1034 aa25.71■■□□□ 1.71
SDC1-205ENST00000447124 TMOD2Q9NZR1 351 aa25.71■■□□□ 1.71
SDC1-205ENST00000447124 CTU1Q7Z7A3 348 aaKnown RBP25.7■■□□□ 1.7
SDC1-205ENST00000447124 PTPN18Q99952 460 aa25.7■■□□□ 1.7
SDC1-205ENST00000447124 ZBTB7BO15156 539 aaPredicted RBP25.69■■□□□ 1.7
SDC1-205ENST00000447124 ATP8B2P98198 1209 aa25.69■■□□□ 1.7
SDC1-205ENST00000447124 G3BP1Q13283 466 aaKnown RBP eCLIP25.69■■□□□ 1.7
SDC1-205ENST00000447124 POLA2Q14181 598 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms