RNA–Protein interactions for RNA: ENST00000447041.6

COL9A1-205, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 4

Gene COL9A1, Length 690 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-205ENST00000447041 KIF16BQ96L93 1317 aa22.77■■□□□ 1.24
COL9A1-205ENST00000447041 IFIT1P09914 478 aaKnown RBP22.76■■□□□ 1.23
COL9A1-205ENST00000447041 RARSP54136 660 aaKnown RBP22.76■■□□□ 1.23
COL9A1-205ENST00000447041 TNFAIP1Q13829 316 aa22.76■■□□□ 1.23
COL9A1-205ENST00000447041 TBC1D22AQ8WUA7 517 aa22.76■■□□□ 1.23
COL9A1-205ENST00000447041 SIL1Q9H173 461 aa22.76■■□□□ 1.23
COL9A1-205ENST00000447041 TCP10L2B9ZVM9 353 aa22.75■■□□□ 1.23
COL9A1-205ENST00000447041 SLC10A4Q96EP9 437 aa22.75■■□□□ 1.23
COL9A1-205ENST00000447041 WNK4Q96J92 1243 aa22.75■■□□□ 1.23
COL9A1-205ENST00000447041 LRRFIP2Q9Y608 721 aaKnown RBP22.75■■□□□ 1.23
COL9A1-205ENST00000447041 USP2O75604 605 aaPredicted RBP22.74■■□□□ 1.23
COL9A1-205ENST00000447041 SLC5A1P13866 664 aa22.74■■□□□ 1.23
COL9A1-205ENST00000447041 CTU1Q7Z7A3 348 aaKnown RBP22.74■■□□□ 1.23
COL9A1-205ENST00000447041 ZNF296Q8WUU4 475 aaPredicted RBP22.74■■□□□ 1.23
COL9A1-205ENST00000447041 LPIN2Q92539 896 aa22.74■■□□□ 1.23
COL9A1-205ENST00000447041 TEPSINQ96N21 525 aa22.74■■□□□ 1.23
COL9A1-205ENST00000447041 MEIS3Q99687 375 aa22.74■■□□□ 1.23
COL9A1-205ENST00000447041 IREB2P48200 963 aaKnown RBP22.73■■□□□ 1.23
COL9A1-205ENST00000447041 TEKT1Q969V4 418 aa22.73■■□□□ 1.23
COL9A1-205ENST00000447041 TMEM39BQ9GZU3 492 aa22.73■■□□□ 1.23
COL9A1-205ENST00000447041 ZBTB48P10074 688 aaPredicted RBP22.72■■□□□ 1.23
COL9A1-205ENST00000447041 CACNB3P54284 484 aa22.72■■□□□ 1.23
COL9A1-205ENST00000447041 HDLBPQ00341 1268 aaKnown RBP22.72■■□□□ 1.23
COL9A1-205ENST00000447041 R3HDMLQ9H3Y0 253 aa22.72■■□□□ 1.23
COL9A1-205ENST00000447041 PA2G4Q9UQ80 394 aaKnown RBP22.72■■□□□ 1.23
COL9A1-205ENST00000447041 MANSC4A6NHS7 340 aaPredicted RBP22.71■■□□□ 1.23
COL9A1-205ENST00000447041 GPR25O00155 361 aa22.71■■□□□ 1.23
COL9A1-205ENST00000447041 GJA5P36382 358 aa22.71■■□□□ 1.23
COL9A1-205ENST00000447041 ANKRD13AQ8IZ07 590 aa22.71■■□□□ 1.23
COL9A1-205ENST00000447041 UNCXA6NJT0 531 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 CIAO1O76071 339 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 TNNI2P48788 182 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 RGS19P49795 217 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 CFHR5Q9BXR6 569 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 FBXO3Q9UK99 471 aa22.7■■□□□ 1.22
COL9A1-205ENST00000447041 MAST3O60307 1309 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 IGF2BP3O00425 579 aaKnown RBP eCLIP22.69■■□□□ 1.22
COL9A1-205ENST00000447041 ATP2B3Q16720 1220 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 IFNL1Q8IU54 200 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 ZDHHC15Q96MV8 337 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 ELP3Q9H9T3 547 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 SUGT1Q9Y2Z0 365 aa22.69■■□□□ 1.22
COL9A1-205ENST00000447041 NOM1Q5C9Z4 860 aaKnown RBP22.68■■□□□ 1.22
COL9A1-205ENST00000447041 INTS3Q68E01 1043 aaKnown RBP22.68■■□□□ 1.22
COL9A1-205ENST00000447041 APOBEC3HQ6NTF7 200 aaKnown RBP22.68■■□□□ 1.22
COL9A1-205ENST00000447041 ARHGAP45Q92619 1136 aa22.68■■□□□ 1.22
COL9A1-205ENST00000447041 CEP126Q9P2H0 1117 aa22.68■■□□□ 1.22
COL9A1-205ENST00000447041 ALDH1A1P00352 501 aa22.67■■□□□ 1.22
COL9A1-205ENST00000447041 IL15P40933 162 aaPredicted RBP22.67■■□□□ 1.22
COL9A1-205ENST00000447041 MLLT1Q03111 559 aaPredicted RBP22.67■■□□□ 1.22
COL9A1-205ENST00000447041 WDR66Q8TBY9 1149 aa22.67■■□□□ 1.22
COL9A1-205ENST00000447041 OPTNQ96CV9 577 aa22.67■■□□□ 1.22
COL9A1-205ENST00000447041 MRIQ9BWK5 157 aa22.67■■□□□ 1.22
COL9A1-205ENST00000447041 TNNQ9UQP3 1299 aa22.67■■□□□ 1.22
COL9A1-205ENST00000447041 INHBEP58166 350 aa22.66■■□□□ 1.22
COL9A1-205ENST00000447041 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.66■■□□□ 1.22
COL9A1-205ENST00000447041 COPRSQ9NQ92 184 aa22.66■■□□□ 1.22
COL9A1-205ENST00000447041 TMOD2Q9NZR1 351 aa22.66■■□□□ 1.22
COL9A1-205ENST00000447041 HDAC5Q9UQL6 1122 aa22.66■■□□□ 1.22
COL9A1-205ENST00000447041 FKTNO75072 461 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 PHKA1P46020 1223 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 SOX10P56693 466 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 VGLL4Q14135 290 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 HHIPL2Q6UWX4 724 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.65■■□□□ 1.22
COL9A1-205ENST00000447041 CNKSR2Q8WXI2 1034 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 HPS5Q9UPZ3 1129 aa22.65■■□□□ 1.22
COL9A1-205ENST00000447041 BCAR3O75815 825 aa22.64■■□□□ 1.21
COL9A1-205ENST00000447041 TRIM27P14373 513 aa22.64■■□□□ 1.21
COL9A1-205ENST00000447041 PRDX5P30044 214 aa22.64■■□□□ 1.21
COL9A1-205ENST00000447041 ADORA1P30542 326 aa22.64■■□□□ 1.21
COL9A1-205ENST00000447041 GNAI3P08754 354 aa22.63■■□□□ 1.21
COL9A1-205ENST00000447041 DIXDC1Q155Q3 683 aa22.63■■□□□ 1.21
COL9A1-205ENST00000447041 PKN2Q16513 984 aaKnown RBP22.63■■□□□ 1.21
COL9A1-205ENST00000447041 FAM83AQ86UY5 434 aa22.63■■□□□ 1.21
COL9A1-205ENST00000447041 FRAT1Q92837 279 aaPredicted RBP22.63■■□□□ 1.21
COL9A1-205ENST00000447041 PTPN18Q99952 460 aa22.63■■□□□ 1.21
COL9A1-205ENST00000447041 DAGLAQ9Y4D2 1042 aa22.63■■□□□ 1.21
COL9A1-205ENST00000447041 RPAP1Q9BWH6 1393 aaPredicted RBP22.63■■□□□ 1.21
COL9A1-205ENST00000447041 SRGAP3O43295 1099 aa22.62■■□□□ 1.21
COL9A1-205ENST00000447041 MAP3K9P80192 1104 aa22.62■■□□□ 1.21
COL9A1-205ENST00000447041 FKBP1CQ5VVH2 108 aa22.62■■□□□ 1.21
COL9A1-205ENST00000447041 GNL3LQ9NVN8 582 aaKnown RBP22.62■■□□□ 1.21
COL9A1-205ENST00000447041 TESPA1A2RU30 521 aaPredicted RBP22.61■■□□□ 1.21
COL9A1-205ENST00000447041 ATF7IPQ6VMQ6 1270 aa22.61■■□□□ 1.21
COL9A1-205ENST00000447041 CLUAP1Q96AJ1 413 aa22.61■■□□□ 1.21
COL9A1-205ENST00000447041 MS4A4AQ96JQ5 239 aa22.61■■□□□ 1.21
COL9A1-205ENST00000447041 DENND2AQ9ULE3 1009 aa22.61■■□□□ 1.21
COL9A1-205ENST00000447041 CSADQ9Y600 493 aa22.61■■□□□ 1.21
COL9A1-205ENST00000447041 SALL1Q9NSC2 1324 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 CRHR2Q13324 411 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 MTX1Q13505 466 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 CCDC102BQ68D86 513 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 OTUD5Q96G74 571 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 WRNIP1Q96S55 665 aa22.6■■□□□ 1.21
COL9A1-205ENST00000447041 SEMA3EO15041 775 aa22.59■■□□□ 1.21
COL9A1-205ENST00000447041 IPO8O15397 1037 aaKnown RBP22.59■■□□□ 1.21
COL9A1-205ENST00000447041 LDHBP07195 334 aaKnown RBP22.59■■□□□ 1.21
COL9A1-205ENST00000447041 TIMM10P62072 90 aa22.59■■□□□ 1.21
COL9A1-205ENST00000447041 OTUD7BQ6GQQ9 843 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms