RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 UBE2Q1Q7Z7E8 422 aa9.36□□□□□ -0.91
HDAC9-216ENST00000446646 WNK4Q96J92 1243 aa9.36□□□□□ -0.91
HDAC9-216ENST00000446646 NBPF3Q9H094 633 aa9.36□□□□□ -0.91
HDAC9-216ENST00000446646 HCSTQ9UBK5 93 aa9.36□□□□□ -0.91
HDAC9-216ENST00000446646 ANGEL1Q9UNK9 670 aaKnown RBP9.36□□□□□ -0.91
HDAC9-216ENST00000446646 SSC5DA1L4H1 1573 aa9.36□□□□□ -0.91
HDAC9-216ENST00000446646 GOLGA8CPA6NN73 597 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 ZBTB7BO15156 539 aaPredicted RBP9.35□□□□□ -0.91
HDAC9-216ENST00000446646 ALDH1A1P00352 501 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 EIF4A1P60842 406 aaKnown RBP9.35□□□□□ -0.91
HDAC9-216ENST00000446646 SP3Q02447 781 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 TCIRG1Q13488 830 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 MRPL50Q8N5N7 158 aaKnown RBP9.35□□□□□ -0.91
HDAC9-216ENST00000446646 DEFB123Q8N688 67 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 STAP2Q9UGK3 403 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 ZSWIM8A7E2V4 1837 aa9.35□□□□□ -0.91
HDAC9-216ENST00000446646 MANSC4A6NHS7 340 aaPredicted RBP9.34□□□□□ -0.91
HDAC9-216ENST00000446646 BHMG1C9JSJ3 638 aaPredicted RBP9.34□□□□□ -0.91
HDAC9-216ENST00000446646 WNT10BO00744 389 aa9.34□□□□□ -0.91
HDAC9-216ENST00000446646 HSPA5P11021 654 aaKnown RBP9.34□□□□□ -0.91
HDAC9-216ENST00000446646 TAF7Q15545 349 aaPredicted RBP9.34□□□□□ -0.91
HDAC9-216ENST00000446646 AGBL3Q8NEM8 1001 aa9.34□□□□□ -0.91
HDAC9-216ENST00000446646 TRMT112Q9UI30 125 aaKnown RBP9.34□□□□□ -0.91
HDAC9-216ENST00000446646 LAMB4A4D0S4 1761 aa9.34□□□□□ -0.91
HDAC9-216ENST00000446646 ANKRD36CQ5JPF3 1778 aa9.34□□□□□ -0.91
HDAC9-216ENST00000446646 UFL1O94874 794 aa9.33□□□□□ -0.92
HDAC9-216ENST00000446646 EIF4G2P78344 907 aaKnown RBP eCLIP9.33□□□□□ -0.92
HDAC9-216ENST00000446646 ARMC9Q7Z3E5 817 aa9.33□□□□□ -0.92
HDAC9-216ENST00000446646 SLC10A4Q96EP9 437 aa9.33□□□□□ -0.92
HDAC9-216ENST00000446646 SEC31BQ9NQW1 1179 aa9.33□□□□□ -0.92
HDAC9-216ENST00000446646 PCDHAC2Q9Y5I4 1007 aa9.33□□□□□ -0.92
HDAC9-216ENST00000446646 AOX1Q06278 1338 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 CTGFP29279 349 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 TSR1Q2NL82 804 aaKnown RBP9.32□□□□□ -0.92
HDAC9-216ENST00000446646 RTL5Q5HYW3 569 aaPredicted RBP9.32□□□□□ -0.92
HDAC9-216ENST00000446646 RTF1Q92541 710 aaKnown RBP9.32□□□□□ -0.92
HDAC9-216ENST00000446646 FAM89AQ96GI7 184 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 EYA3Q99504 573 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 ZC3H12CQ9C0D7 883 aaKnown RBP9.32□□□□□ -0.92
HDAC9-216ENST00000446646 MTMR10Q9NXD2 777 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 RABGEF1Q9UJ41 708 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 STXBP5LQ9Y2K9 1186 aa9.32□□□□□ -0.92
HDAC9-216ENST00000446646 ERBB4Q15303 1308 aa9.31□□□□□ -0.92
HDAC9-216ENST00000446646 SH3TC1Q8TE82 1336 aa9.31□□□□□ -0.92
HDAC9-216ENST00000446646 TMC4Q7Z404 712 aa9.31□□□□□ -0.92
HDAC9-216ENST00000446646 NBPF11Q86T75 865 aa9.31□□□□□ -0.92
HDAC9-216ENST00000446646 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.31□□□□□ -0.92
HDAC9-216ENST00000446646 PRDM6Q9NQX0 595 aa9.31□□□□□ -0.92
HDAC9-216ENST00000446646 USP17L3A6NCW0 530 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 USP17L4A6NCW7 530 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 PER1O15534 1290 aaPredicted RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 ZBTB48P10074 688 aaPredicted RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 EIF2S2P20042 333 aaKnown RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 NF2P35240 595 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 PTPN5P54829 565 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 INHBEP58166 350 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 AIMP1Q12904 312 aaKnown RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 SF3B3Q15393 1217 aaKnown RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 DACT2Q5SW24 774 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 COPS6Q7L5N1 327 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 USP17L1Q7RTZ2 530 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 XAGE3Q8WTP9 111 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 BRI3BPQ8WY22 251 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 NECTIN2Q92692 538 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 WNT2BQ93097 391 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 ZBED3Q96IU2 234 aaPredicted RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 PODXL2Q9NZ53 605 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 KIAA1468Q9P260 1216 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 DDX60Q8IY21 1712 aaKnown RBP9.3□□□□□ -0.92
HDAC9-216ENST00000446646 DNAH12Q6ZR08 3092 aa9.3□□□□□ -0.92
HDAC9-216ENST00000446646 BDP1A6H8Y1 2624 aa9.29□□□□□ -0.92
HDAC9-216ENST00000446646 RPS8P62241 208 aaKnown RBP9.29□□□□□ -0.92
HDAC9-216ENST00000446646 MAP3K11Q16584 847 aa9.29□□□□□ -0.92
HDAC9-216ENST00000446646 FAM43AQ8N2R8 423 aa9.29□□□□□ -0.92
HDAC9-216ENST00000446646 ANKIB1Q9P2G1 1089 aa9.29□□□□□ -0.92
HDAC9-216ENST00000446646 GGA1Q9UJY5 639 aa9.29□□□□□ -0.92
HDAC9-216ENST00000446646 TRIM6-TRIM34B2RNG4 842 aa9.28□□□□□ -0.92
HDAC9-216ENST00000446646 ATP5J2-PTCD1G3V325 749 aa9.28□□□□□ -0.92
HDAC9-216ENST00000446646 NBPF12Q5TAG4 269 aaPredicted RBP9.28□□□□□ -0.92
HDAC9-216ENST00000446646 CCDC85AQ96PX6 553 aaPredicted RBP9.28□□□□□ -0.92
HDAC9-216ENST00000446646 DEFB129Q9H1M3 183 aa9.28□□□□□ -0.92
HDAC9-216ENST00000446646 ZNF646O15015 1829 aaPredicted RBP9.28□□□□□ -0.92
HDAC9-216ENST00000446646 A0A1W2PPC1 479 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 USP2O75604 605 aaPredicted RBP9.27□□□□□ -0.93
HDAC9-216ENST00000446646 CCL5P13501 91 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 KLRK1P26718 216 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 ZEB1P37275 1124 aaPredicted RBP9.27□□□□□ -0.93
HDAC9-216ENST00000446646 GJA8P48165 433 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 BCAMP50895 628 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 SMYD5Q6GMV2 418 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 THSD4Q6ZMP0 1018 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 TXNRD3Q86VQ6 643 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 KIAA0825Q8IV33 1275 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 JARID2Q92833 1246 aaPredicted RBP9.27□□□□□ -0.93
HDAC9-216ENST00000446646 GUCD1Q96NT3 240 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 GDF15Q99988 308 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 ELP3Q9H9T3 547 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 SEPT9Q9UHD8 586 aaPredicted RBP9.27□□□□□ -0.93
HDAC9-216ENST00000446646 NR2E3Q9Y5X4 410 aa9.27□□□□□ -0.93
HDAC9-216ENST00000446646 PIEZO1Q92508 2521 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms