RNA–Protein interactions for RNA: ENST00000444942.1

LINC00642-203, long intergenic non-protein coding RNA 642, humanhuman

TSL 1 (best)

Gene LINC00642, Length 1,376 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-203ENST00000444942 BCAR3O75815 825 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 RARSP54136 660 aaKnown RBP11.66□□□□□ -0.54
LINC00642-203ENST00000444942 LACTBP83111 547 aaPredicted RBP11.66□□□□□ -0.54
LINC00642-203ENST00000444942 GCKRQ14397 625 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 KIF22Q14807 665 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 TAF1CQ15572 869 aaPredicted RBP11.66□□□□□ -0.54
LINC00642-203ENST00000444942 BEND3Q5T5X7 828 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 LINS1Q8NG48 757 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 MAFAQ8NHW3 353 aaPredicted RBP11.66□□□□□ -0.54
LINC00642-203ENST00000444942 ZC3H12CQ9C0D7 883 aaKnown RBP11.66□□□□□ -0.54
LINC00642-203ENST00000444942 RCAN3Q9UKA8 241 aa11.66□□□□□ -0.54
LINC00642-203ENST00000444942 COL1A1P02452 1464 aaPredicted RBP11.65□□□□□ -0.54
LINC00642-203ENST00000444942 PDE8AO60658 829 aa11.65□□□□□ -0.55
LINC00642-203ENST00000444942 CT47B1P0C2W7 299 aaPredicted RBP11.65□□□□□ -0.55
LINC00642-203ENST00000444942 GRK4P32298 578 aa11.65□□□□□ -0.55
LINC00642-203ENST00000444942 APOBEC3FQ8IUX4 373 aaKnown RBP11.65□□□□□ -0.55
LINC00642-203ENST00000444942 FRAT1Q92837 279 aaPredicted RBP11.65□□□□□ -0.55
LINC00642-203ENST00000444942 SEC31BQ9NQW1 1179 aa11.65□□□□□ -0.55
LINC00642-203ENST00000444942 COL2A1P02458 1487 aaPredicted RBP11.64□□□□□ -0.55
LINC00642-203ENST00000444942 G3V3G9 751 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 SGPL1O95470 568 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 MAGEA10P43363 369 aaPredicted RBP11.64□□□□□ -0.55
LINC00642-203ENST00000444942 DCAF8Q5TAQ9 597 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 FAM161BQ96MY7 647 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 SRCIN1Q9C0H9 1055 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 C9orf78Q9NZ63 289 aaPredicted RBP11.64□□□□□ -0.55
LINC00642-203ENST00000444942 ZMYND8Q9ULU4 1186 aaPredicted RBP11.64□□□□□ -0.55
LINC00642-203ENST00000444942 TNNQ9UQP3 1299 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 CDH23Q9H251 3354 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 PTPRCP08575 1304 aa11.64□□□□□ -0.55
LINC00642-203ENST00000444942 H7C1W4 665 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 PPP1R12BO60237 982 aaPredicted RBP11.63□□□□□ -0.55
LINC00642-203ENST00000444942 CAPN2P17655 700 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 RRP1P56182 461 aaKnown RBP11.63□□□□□ -0.55
LINC00642-203ENST00000444942 CELF1Q92879 486 aaKnown RBP11.63□□□□□ -0.55
LINC00642-203ENST00000444942 SRRDQ9UH36 339 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 CHMP3Q9Y3E7 222 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 RIPOR2Q9Y4F9 1068 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 MGAMO43451 1857 aa11.63□□□□□ -0.55
LINC00642-203ENST00000444942 USP17L3A6NCW0 530 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 USP17L4A6NCW7 530 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 SASH1O94885 1247 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 CTSWP56202 376 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 SF3B3Q15393 1217 aaKnown RBP11.62□□□□□ -0.55
LINC00642-203ENST00000444942 CCDC152Q4G0S7 254 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 TJAP1Q5JTD0 557 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 USP17L1Q7RTZ2 530 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 C7orf61Q8IZ16 206 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 BRI3BPQ8WY22 251 aa11.62□□□□□ -0.55
LINC00642-203ENST00000444942 UBE2OQ9C0C9 1292 aaKnown RBP11.62□□□□□ -0.55
LINC00642-203ENST00000444942 ARIH1Q9Y4X5 557 aaPredicted RBP11.62□□□□□ -0.55
LINC00642-203ENST00000444942 GRM8O00222 908 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 TLR2O60603 784 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 ECM2O94769 699 aaPredicted RBP11.61□□□□□ -0.55
LINC00642-203ENST00000444942 CASP7P55210 303 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 UBXN2AP68543 259 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 OGFOD1Q8N543 542 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 RAET1EQ8TD07 263 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 CLUAP1Q96AJ1 413 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 TRIM47Q96LD4 638 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 CDX2Q99626 313 aaPredicted RBP11.61□□□□□ -0.55
LINC00642-203ENST00000444942 PODXL2Q9NZ53 605 aa11.61□□□□□ -0.55
LINC00642-203ENST00000444942 ALDH1L1O75891 902 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 NBPF7P0C2Y1 421 aaPredicted RBP11.6□□□□□ -0.55
LINC00642-203ENST00000444942 HSP90B1P14625 803 aaKnown RBP11.6□□□□□ -0.55
LINC00642-203ENST00000444942 EPHA10Q5JZY3 1008 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 FAM43AQ8N2R8 423 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 TTLL11Q8NHH1 800 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 PAWRQ96IZ0 340 aaKnown RBP11.6□□□□□ -0.55
LINC00642-203ENST00000444942 UNC93B1Q9H1C4 597 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 DEFB129Q9H1M3 183 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 GREM2Q9H772 168 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 BIN2Q9UBW5 565 aaPredicted RBP11.6□□□□□ -0.55
LINC00642-203ENST00000444942 KIF16BQ96L93 1317 aa11.6□□□□□ -0.55
LINC00642-203ENST00000444942 CCL15-CCL14A0A0B4J2E2 113 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 UFL1O94874 794 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 SYN1P17600 705 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 CTGFP29279 349 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 IREB2P48200 963 aaKnown RBP11.59□□□□□ -0.55
LINC00642-203ENST00000444942 RPS8P62241 208 aaKnown RBP11.59□□□□□ -0.55
LINC00642-203ENST00000444942 CCL15Q16663 113 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 ZNF697Q5TEC3 545 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 ANKRD13AQ8IZ07 590 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 OPTNQ96CV9 577 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 SUCLG2Q96I99 432 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 API5Q9BZZ5 524 aaKnown RBP11.59□□□□□ -0.55
LINC00642-203ENST00000444942 FAM205AQ6ZU69 1335 aa11.59□□□□□ -0.55
LINC00642-203ENST00000444942 USP2O75604 605 aaPredicted RBP11.58□□□□□ -0.56
LINC00642-203ENST00000444942 WDHD1O75717 1129 aaPredicted RBP11.58□□□□□ -0.56
LINC00642-203ENST00000444942 TFRCP02786 760 aaKnown RBP11.58□□□□□ -0.56
LINC00642-203ENST00000444942 OSBPP22059 807 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 HOXD10P28358 340 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 MMP14P50281 582 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 FOXO4P98177 505 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 PODNQ7Z5L7 613 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 NECAB2Q7Z6G3 386 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 ANKRD18AQ8IVF6 992 aa11.58□□□□□ -0.56
LINC00642-203ENST00000444942 ZBED3Q96IU2 234 aaPredicted RBP11.58□□□□□ -0.56
LINC00642-203ENST00000444942 MUC6Q6W4X9 2439 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms