RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 CCL15Q16663 113 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 SLC9C1Q4G0N8 1177 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 EPHA10Q5JZY3 1008 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 BEND3Q5T5X7 828 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 DZIP1LQ8IYY4 767 aaKnown RBP18.34■□□□□ 0.53
HMGN1-208ENST00000443046 FAM43AQ8N2R8 423 aa18.34■□□□□ 0.53
HMGN1-208ENST00000443046 TTF2Q9UNY4 1162 aaKnown RBP18.34■□□□□ 0.53
HMGN1-208ENST00000443046 MFSD14BQ5SR56 506 aa18.33■□□□□ 0.52
HMGN1-208ENST00000443046 LMBR1LQ6UX01 489 aa18.33■□□□□ 0.52
HMGN1-208ENST00000443046 LDHAL6AQ6ZMR3 332 aa18.33■□□□□ 0.52
HMGN1-208ENST00000443046 ZNF594Q96JF6 807 aaPredicted RBP18.33■□□□□ 0.52
HMGN1-208ENST00000443046 TMEM39BQ9GZU3 492 aa18.33■□□□□ 0.52
HMGN1-208ENST00000443046 COL6A3P12111 3177 aa18.33■□□□□ 0.52
HMGN1-208ENST00000443046 VAMP4O75379 141 aa18.32■□□□□ 0.52
HMGN1-208ENST00000443046 UBE4AQ14139 1066 aa18.32■□□□□ 0.52
HMGN1-208ENST00000443046 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
HMGN1-208ENST00000443046 OTUD5Q96G74 571 aa18.32■□□□□ 0.52
HMGN1-208ENST00000443046 FAM84BQ96KN1 310 aaPredicted RBP18.32■□□□□ 0.52
HMGN1-208ENST00000443046 SPDYE5A6NIY4 337 aa18.31■□□□□ 0.52
HMGN1-208ENST00000443046 TLR2O60603 784 aa18.31■□□□□ 0.52
HMGN1-208ENST00000443046 CRKP46108 304 aa18.31■□□□□ 0.52
HMGN1-208ENST00000443046 ZCCHC17Q9NP64 241 aaKnown RBP18.31■□□□□ 0.52
HMGN1-208ENST00000443046 ZSWIM8A7E2V4 1837 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 TCP10L2B9ZVM9 353 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 PLIN1O60240 522 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 HIBADHP31937 336 aaKnown RBP18.3■□□□□ 0.52
HMGN1-208ENST00000443046 GYG1P46976 350 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 CCDC57Q2TAC2 916 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 SLC4A8Q2Y0W8 1093 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 ARHGAP39Q9C0H5 1083 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 CHMP3Q9Y3E7 222 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 CSADQ9Y600 493 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 SNCAIPQ9Y6H5 919 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 LAMA3Q16787 3333 aa18.3■□□□□ 0.52
HMGN1-208ENST00000443046 H0YGN5 161 aa18.29■□□□□ 0.52
HMGN1-208ENST00000443046 GNRH1P01148 92 aa18.29■□□□□ 0.52
HMGN1-208ENST00000443046 TNNI2P48788 182 aa18.29■□□□□ 0.52
HMGN1-208ENST00000443046 LACTBP83111 547 aaPredicted RBP18.29■□□□□ 0.52
HMGN1-208ENST00000443046 GRIK5Q16478 980 aa18.29■□□□□ 0.52
HMGN1-208ENST00000443046 CNNM1Q9NRU3 951 aa18.29■□□□□ 0.52
HMGN1-208ENST00000443046 FANCIQ9NVI1 1328 aa18.28■□□□□ 0.52
HMGN1-208ENST00000443046 BTBD19C9JJ37 291 aa18.28■□□□□ 0.52
HMGN1-208ENST00000443046 F6X3S4 739 aa18.28■□□□□ 0.52
HMGN1-208ENST00000443046 CETPP11597 493 aa18.28■□□□□ 0.52
HMGN1-208ENST00000443046 HDLBPQ00341 1268 aaKnown RBP18.28■□□□□ 0.52
HMGN1-208ENST00000443046 SH3TC2Q8TF17 1288 aa18.28■□□□□ 0.52
HMGN1-208ENST00000443046 GRM8O00222 908 aa18.27■□□□□ 0.52
HMGN1-208ENST00000443046 PRMT2P55345 433 aa18.27■□□□□ 0.52
HMGN1-208ENST00000443046 FBXO33Q7Z6M2 555 aa18.27■□□□□ 0.52
HMGN1-208ENST00000443046 ERO1BQ86YB8 467 aa18.27■□□□□ 0.52
HMGN1-208ENST00000443046 MRIQ9BWK5 157 aa18.27■□□□□ 0.52
HMGN1-208ENST00000443046 IRF6O14896 467 aa18.26■□□□□ 0.51
HMGN1-208ENST00000443046 TAF7LQ5H9L4 462 aa18.26■□□□□ 0.51
HMGN1-208ENST00000443046 SHISA4Q96DD7 197 aa18.26■□□□□ 0.51
HMGN1-208ENST00000443046 PUS3Q9BZE2 481 aaKnown RBP18.26■□□□□ 0.51
HMGN1-208ENST00000443046 RIPOR2Q9Y4F9 1068 aa18.26■□□□□ 0.51
HMGN1-208ENST00000443046 CTGFP29279 349 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 PPIL2Q13356 520 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 KIF22Q14807 665 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 CCDC184Q52MB2 194 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 FKBP1CQ5VVH2 108 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 C17orf99Q6UX52 265 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 FAM83AQ86UY5 434 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 ZKSCAN4Q969J2 545 aaPredicted RBP18.25■□□□□ 0.51
HMGN1-208ENST00000443046 KAZALD1Q96I82 304 aa18.25■□□□□ 0.51
HMGN1-208ENST00000443046 WDHD1O75717 1129 aaPredicted RBP18.24■□□□□ 0.51
HMGN1-208ENST00000443046 MYCP01106 439 aaPredicted RBP18.24■□□□□ 0.51
HMGN1-208ENST00000443046 CACNB3P54284 484 aa18.24■□□□□ 0.51
HMGN1-208ENST00000443046 SNAPC2Q13487 334 aa18.24■□□□□ 0.51
HMGN1-208ENST00000443046 UBE2Q1Q7Z7E8 422 aa18.24■□□□□ 0.51
HMGN1-208ENST00000443046 ZDHHC15Q96MV8 337 aa18.24■□□□□ 0.51
HMGN1-208ENST00000443046 ALDH1L1O75891 902 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 MTFR1Q15390 333 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 APOBEC3HQ6NTF7 200 aaKnown RBP18.23■□□□□ 0.51
HMGN1-208ENST00000443046 TBC1D22AQ8WUA7 517 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 TEKT1Q969V4 418 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 WRNIP1Q96S55 665 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 MROH5Q6ZUA9 1318 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 ADGRA2Q96PE1 1338 aa18.23■□□□□ 0.51
HMGN1-208ENST00000443046 PPATQ06203 517 aa18.22■□□□□ 0.51
HMGN1-208ENST00000443046 EXOSC9Q06265 439 aaKnown RBP18.22■□□□□ 0.51
HMGN1-208ENST00000443046 CHRDL2Q6WN34 429 aa18.22■□□□□ 0.51
HMGN1-208ENST00000443046 PRO3102Q9H379 93 aa18.22■□□□□ 0.51
HMGN1-208ENST00000443046 C9orf78Q9NZ63 289 aaPredicted RBP18.22■□□□□ 0.51
HMGN1-208ENST00000443046 SRRDQ9UH36 339 aa18.22■□□□□ 0.51
HMGN1-208ENST00000443046 RPAP1Q9BWH6 1393 aaPredicted RBP18.21■□□□□ 0.51
HMGN1-208ENST00000443046 MOGSQ13724 837 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 ANKRD23Q86SG2 305 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 WDR63Q8IWG1 891 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 VGLL2Q8N8G2 317 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 HOOK2Q96ED9 719 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 TRIM47Q96LD4 638 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 RBM27Q9P2N5 1060 aaKnown RBP18.21■□□□□ 0.51
HMGN1-208ENST00000443046 IQSEC3Q9UPP2 1182 aaPredicted RBP18.21■□□□□ 0.51
HMGN1-208ENST00000443046 UTYO14607 1347 aa18.21■□□□□ 0.51
HMGN1-208ENST00000443046 PSMC4P43686 418 aa18.2■□□□□ 0.5
HMGN1-208ENST00000443046 GJA8P48165 433 aa18.2■□□□□ 0.5
HMGN1-208ENST00000443046 SUCLG2Q96I99 432 aa18.2■□□□□ 0.5
HMGN1-208ENST00000443046 ZNF112Q9UJU3 913 aa18.2■□□□□ 0.5
HMGN1-208ENST00000443046 KCNH4Q9UQ05 1017 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms