RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 ZNF589Q86UQ0 364 aaPredicted RBP27.67■■■□□ 2.02
CPSF4-204ENST00000436336 STRIP1Q5VSL9 837 aa27.66■■■□□ 2.02
CPSF4-204ENST00000436336 NAA16Q6N069 864 aaPredicted RBP27.66■■■□□ 2.02
CPSF4-204ENST00000436336 FBXW7Q969H0 707 aa27.66■■■□□ 2.02
CPSF4-204ENST00000436336 PUS7LQ9H0K6 701 aaKnown RBP27.66■■■□□ 2.02
CPSF4-204ENST00000436336 SUGT1Q9Y2Z0 365 aa27.66■■■□□ 2.02
CPSF4-204ENST00000436336 DICER1Q9UPY3 1922 aaKnown RBP27.65■■■□□ 2.02
CPSF4-204ENST00000436336 M0R2C6 588 aa27.65■■■□□ 2.02
CPSF4-204ENST00000436336 MECOMQ03112 1051 aa27.65■■■□□ 2.02
CPSF4-204ENST00000436336 DZIP1Q86YF9 867 aaKnown RBP27.65■■■□□ 2.02
CPSF4-204ENST00000436336 C22orf23Q9BZE7 217 aa27.65■■■□□ 2.02
CPSF4-204ENST00000436336 LSG1Q9H089 658 aaKnown RBP27.65■■■□□ 2.02
CPSF4-204ENST00000436336 CYP7A1P22680 504 aa27.64■■■□□ 2.02
CPSF4-204ENST00000436336 FKBP1AP62942 108 aaKnown RBP27.64■■■□□ 2.02
CPSF4-204ENST00000436336 CCDC129Q6ZRS4 1044 aa27.64■■■□□ 2.02
CPSF4-204ENST00000436336 GOLGB1Q14789 3259 aaKnown RBP27.64■■■□□ 2.02
CPSF4-204ENST00000436336 SBF1O95248 1867 aa27.64■■■□□ 2.02
CPSF4-204ENST00000436336 USP17L3A6NCW0 530 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 USP17L4A6NCW7 530 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 USP17L1Q7RTZ2 530 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 NIM1KQ8IY84 436 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 ZNF384Q8TF68 577 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 TBC1D32Q96NH3 1257 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 KCNQ5Q9NR82 932 aa27.64■■■□□ 2.01
CPSF4-204ENST00000436336 YDJCA8MPS7 323 aa27.63■■■□□ 2.01
CPSF4-204ENST00000436336 GRIK5Q16478 980 aa27.62■■■□□ 2.01
CPSF4-204ENST00000436336 GPAA1O43292 621 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 GSTO1P78417 241 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 RASSF7Q02833 373 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 DACT2Q5SW24 774 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 ZNRF3Q9ULT6 936 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 RBM25P49756 843 aaKnown RBP27.61■■■□□ 2.01
CPSF4-204ENST00000436336 CERS5Q8N5B7 392 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 JDP2Q8WYK2 163 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 AIDAQ96BJ3 306 aa27.61■■■□□ 2.01
CPSF4-204ENST00000436336 PTH1RQ03431 593 aa27.6■■■□□ 2.01
CPSF4-204ENST00000436336 ADGRA1Q86SQ6 560 aa27.6■■■□□ 2.01
CPSF4-204ENST00000436336 ARHGAP27Q6ZUM4 889 aa27.59■■■□□ 2.01
CPSF4-204ENST00000436336 MAP4K1Q92918 833 aa27.59■■■□□ 2.01
CPSF4-204ENST00000436336 LDHCP07864 332 aa27.58■■■□□ 2.01
CPSF4-204ENST00000436336 SLF2Q8IX21 1173 aa27.58■■■□□ 2.01
CPSF4-204ENST00000436336 MCCP23508 829 aa27.58■■■□□ 2.01
CPSF4-204ENST00000436336 DSCC1Q9BVC3 393 aa27.58■■■□□ 2.01
CPSF4-204ENST00000436336 MXD3Q9BW11 206 aa27.58■■■□□ 2.01
CPSF4-204ENST00000436336 MAGEB6P1A0A0J9YX57 407 aa27.57■■■□□ 2
CPSF4-204ENST00000436336 MBD4O95243 580 aa27.57■■■□□ 2
CPSF4-204ENST00000436336 MIGA1Q8NAN2 632 aa27.57■■■□□ 2
CPSF4-204ENST00000436336 STRBPQ96SI9 672 aaKnown RBP27.57■■■□□ 2
CPSF4-204ENST00000436336 RBM19Q9Y4C8 960 aaKnown RBP27.57■■■□□ 2
CPSF4-204ENST00000436336 HSPD1P10809 573 aaKnown RBP27.56■■■□□ 2
CPSF4-204ENST00000436336 MYO3BQ8WXR4 1341 aa27.56■■■□□ 2
CPSF4-204ENST00000436336 YBX3P16989 372 aaKnown RBP eCLIP27.55■■■□□ 29e-7■□□□□ 10.2
CPSF4-204ENST00000436336 PRELPP51888 382 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 VPS53Q5VIR6 699 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 RIOK1Q9BRS2 568 aaKnown RBP27.55■■■□□ 2
CPSF4-204ENST00000436336 ARMT1Q9H993 441 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 TTF2Q9UNY4 1162 aaKnown RBP27.55■■■□□ 2
CPSF4-204ENST00000436336 MROH7-TTC4A0A0A0MT08 1334 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 GNAT2P19087 354 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 HSPA4P34932 840 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 DIXDC1Q155Q3 683 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 LCORLQ8N3X6 602 aa27.55■■■□□ 2
CPSF4-204ENST00000436336 FAM163AQ96GL9 167 aaPredicted RBP27.55■■■□□ 2
CPSF4-204ENST00000436336 CDK5RAP2Q96SN8 1893 aa27.54■■■□□ 2
CPSF4-204ENST00000436336 RAD17O75943 681 aa27.54■■■□□ 2
CPSF4-204ENST00000436336 VIL1P09327 827 aaKnown RBP27.54■■■□□ 2
CPSF4-204ENST00000436336 RBM8AQ9Y5S9 174 aaKnown RBP27.54■■■□□ 2
CPSF4-204ENST00000436336 U3KPZ7 1027 aaPredicted RBP27.54■■■□□ 2
CPSF4-204ENST00000436336 ADAMTSL1Q8N6G6 1762 aa27.53■■■□□ 2
CPSF4-204ENST00000436336 PSMD14O00487 310 aa27.53■■■□□ 2
CPSF4-204ENST00000436336 RSBN1LQ6PCB5 846 aaPredicted RBP27.53■■■□□ 2
CPSF4-204ENST00000436336 F8W031 263 aaPredicted RBP27.53■■■□□ 2
CPSF4-204ENST00000436336 LMNB1P20700 586 aa27.53■■■□□ 2
CPSF4-204ENST00000436336 NOL10Q9BSC4 688 aaKnown RBP27.53■■■□□ 2
CPSF4-204ENST00000436336 AATFQ9NY61 560 aaKnown RBP eCLIP27.53■■■□□ 2
CPSF4-204ENST00000436336 GAKO14976 1311 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 BAG3O95817 575 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 DYNLL1P63167 89 aaKnown RBP27.52■■■□□ 2
CPSF4-204ENST00000436336 CXCL9Q07325 125 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 NECTIN1Q15223 517 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 CERS3Q8IU89 383 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 RPAP1Q9BWH6 1393 aaPredicted RBP27.52■■■□□ 2
CPSF4-204ENST00000436336 MRIQ9BWK5 157 aa27.52■■■□□ 2
CPSF4-204ENST00000436336 LAMA4Q16363 1823 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 FOXP2O15409 715 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 PPP4CP60510 307 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 CIAPIN1Q6FI81 312 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 KIAA0825Q8IV33 1275 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 ECM29Q5VYK3 1845 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 TIAM2Q8IVF5 1701 aa27.51■■□□□ 1.99
CPSF4-204ENST00000436336 GPR75-ASB3A0A0A6YYF3 556 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 PATL2C9JE40 543 aaKnown RBP27.5■■□□□ 1.99
CPSF4-204ENST00000436336 FZD9O00144 591 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 HDLBPQ00341 1268 aaKnown RBP27.5■■□□□ 1.99
CPSF4-204ENST00000436336 HHIPL2Q6UWX4 724 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 FOCADQ5VW36 1801 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 ANAPC15P60006 121 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 TNIP1Q15025 636 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 SLC4A4Q9Y6R1 1079 aa27.5■■□□□ 1.99
CPSF4-204ENST00000436336 TEKT1Q969V4 418 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms