RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 SEC62Q99442 399 aaKnown RBP12.56□□□□□ -0.4
SCN4A-201ENST00000435607 PABPC4Q13310 644 aaKnown RBP eCLIP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 ELMSAN1Q6PJG2 1045 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 FEZ2Q9UHY8 353 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 ESPNB1AK53 854 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 SARNPP82979 210 aaKnown RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 LEO1Q8WVC0 666 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 ZNF277Q9NRM2 450 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 CSADQ9Y600 493 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 SLC9C2Q5TAH2 1124 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 PALM3A6NDB9 673 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 CCDC26Q8TAB7 109 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 TFIP11Q9UBB9 837 aaKnown RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 KRT9P35527 623 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 PI4KAP2A4QPH2 592 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 YWHAEP62258 255 aaKnown RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 DCAF17Q5H9S7 520 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 CCDC25Q86WR0 208 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 PI4KAP1Q8N8J0 262 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 CNBD1Q8NA66 436 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 CDCA7Q9BWT1 371 aaPredicted RBP12.55□□□□□ -0.4
SCN4A-201ENST00000435607 NKIRAS1Q9NYS0 192 aa12.55□□□□□ -0.4
SCN4A-201ENST00000435607 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 IL2RBP14784 551 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 TNNC1P63316 161 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 CHRNA2Q15822 529 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 ZNF449Q6P9G9 518 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 PSPC1Q8WXF1 523 aaKnown RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 PPANQ9NQ55 473 aaKnown RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 CCDC87Q9NVE4 849 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 IGF1RP08069 1367 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 CALUO43852 315 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 SLC12A2P55011 1212 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 STMN2Q93045 179 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 KCNK9Q9NPC2 374 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 WWC3Q9ULE0 1092 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 GOLGA8CPA6NN73 597 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 NME9Q86XW9 330 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 EAPPQ56P03 285 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 LGSNQ5TDP6 509 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 ATRIPQ8WXE1 791 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 C16orf45Q96MC5 204 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 DENND2AQ9ULE3 1009 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 IQSEC3Q9UPP2 1182 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 SH2D4BQ5SQS7 431 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 ARFGAP2Q8N6H7 521 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 USH1CQ9Y6N9 552 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 IVLP07476 585 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 UAP1Q16222 522 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 SDCCAG8Q86SQ7 713 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 LARGE2Q8N3Y3 721 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 LRRC59Q96AG4 307 aaKnown RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 TROQ12816 1431 aaPredicted RBP12.54□□□□□ -0.4
SCN4A-201ENST00000435607 EFCAB5A4FU69 1503 aa12.54□□□□□ -0.4
SCN4A-201ENST00000435607 FYB2Q5VWT5 728 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 NIM1KQ8IY84 436 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 SV2BQ7L1I2 683 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 TEKT1Q969V4 418 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 ATP2C2O75185 946 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 PTGS1P23219 599 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 ARFGAP3Q9NP61 516 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 PRPF6O94906 941 aaKnown RBP12.53□□□□□ -0.4
SCN4A-201ENST00000435607 THUMPD2Q9BTF0 503 aaKnown RBP12.53□□□□□ -0.4
SCN4A-201ENST00000435607 VCX3BQ9H321 246 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 SAMD15Q9P1V8 674 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 FAM8A1Q9UBU6 413 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 SPDYE16A6NNV3 312 aaPredicted RBP12.53□□□□□ -0.4
SCN4A-201ENST00000435607 SPDYE2Q495Y8 402 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 ZKSCAN3Q9BRR0 538 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 PTPDC1A2A3K4 754 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 ARHGEF35A5YM69 484 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 TEX11Q8IYF3 940 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 NSD2O96028 1365 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 DHX29Q7Z478 1369 aaKnown RBP12.53□□□□□ -0.4
SCN4A-201ENST00000435607 CASQ2O14958 399 aaPredicted RBP12.53□□□□□ -0.4
SCN4A-201ENST00000435607 SPOPO43791 374 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 TUBB4AP04350 444 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 AS3MTQ9HBK9 375 aa12.53□□□□□ -0.4
SCN4A-201ENST00000435607 TYW5A2RUC4 315 aaKnown RBP12.52□□□□□ -0.4
SCN4A-201ENST00000435607 C11orf95C9JLR9 678 aaPredicted RBP12.52□□□□□ -0.4
SCN4A-201ENST00000435607 BAG6P46379 1132 aa12.52□□□□□ -0.4
SCN4A-201ENST00000435607 FAM47CQ5HY64 1035 aa12.52□□□□□ -0.4
SCN4A-201ENST00000435607 CCDC121Q6ZUS5 278 aa12.52□□□□□ -0.4
SCN4A-201ENST00000435607 VCXQ9H320 206 aa12.52□□□□□ -0.4
SCN4A-201ENST00000435607 LMTK3Q96Q04 1460 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 VAV2P52735 878 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 TERF1P54274 439 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 UBL4BQ8N7F7 174 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.52□□□□□ -0.41
SCN4A-201ENST00000435607 RAPGEF1Q13905 1077 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 SND1Q7KZF4 910 aaKnown RBP eCLIP12.52□□□□□ -0.41
SCN4A-201ENST00000435607 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 UBXN1Q04323 297 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 USP48Q86UV5 1035 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 UVSSAQ2YD98 709 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 INTS8Q75QN2 995 aaKnown RBP12.52□□□□□ -0.41
SCN4A-201ENST00000435607 CPLX4Q7Z7G2 160 aa12.52□□□□□ -0.41
SCN4A-201ENST00000435607 CETN3O15182 167 aa12.51□□□□□ -0.41
SCN4A-201ENST00000435607 TNFAIP1Q13829 316 aa12.51□□□□□ -0.41
SCN4A-201ENST00000435607 ATP2A3Q93084 1043 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms