RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 TCP10L2B9ZVM9 353 aa21.36■■□□□ 1.01
TRIM39-209ENST00000428728 EYA2O00167 538 aa21.36■■□□□ 1.01
TRIM39-209ENST00000428728 IREB2P48200 963 aaKnown RBP21.36■■□□□ 1.01
TRIM39-209ENST00000428728 TBC1D22AQ8WUA7 517 aa21.36■■□□□ 1.01
TRIM39-209ENST00000428728 ZNF296Q8WUU4 475 aaPredicted RBP21.36■■□□□ 1.01
TRIM39-209ENST00000428728 WNK4Q96J92 1243 aa21.36■■□□□ 1.01
TRIM39-209ENST00000428728 SIL1Q9H173 461 aa21.36■■□□□ 1.01
TRIM39-209ENST00000428728 SLC5A1P13866 664 aa21.35■■□□□ 1.01
TRIM39-209ENST00000428728 FGFR2P21802 821 aa21.35■■□□□ 1.01
TRIM39-209ENST00000428728 CDAN1Q8IWY9 1227 aa21.35■■□□□ 1.01
TRIM39-209ENST00000428728 KIF16BQ96L93 1317 aa21.34■■□□□ 1.01
TRIM39-209ENST00000428728 MLLT1Q03111 559 aaPredicted RBP21.34■■□□□ 1.01
TRIM39-209ENST00000428728 TEKT1Q969V4 418 aa21.34■■□□□ 1.01
TRIM39-209ENST00000428728 API5Q9BZZ5 524 aaKnown RBP21.34■■□□□ 1.01
TRIM39-209ENST00000428728 TMEM39BQ9GZU3 492 aa21.34■■□□□ 1.01
TRIM39-209ENST00000428728 LRRFIP2Q9Y608 721 aaKnown RBP21.34■■□□□ 1.01
TRIM39-209ENST00000428728 MANSC4A6NHS7 340 aaPredicted RBP21.33■■□□□ 1.01
TRIM39-209ENST00000428728 GPR25O00155 361 aa21.33■■□□□ 1.01
TRIM39-209ENST00000428728 USP2O75604 605 aaPredicted RBP21.33■■□□□ 1.01
TRIM39-209ENST00000428728 ZBTB48P10074 688 aaPredicted RBP21.33■■□□□ 1.01
TRIM39-209ENST00000428728 ATG9AQ7Z3C6 839 aa21.33■■□□□ 1.01
TRIM39-209ENST00000428728 MYH2Q9UKX2 1941 aa21.33■■□□□ 1
TRIM39-209ENST00000428728 TNNI2P48788 182 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 CACNB3P54284 484 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 ANKRD13AQ8IZ07 590 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 LPIN2Q92539 896 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 TEPSINQ96N21 525 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 MEIS3Q99687 375 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 R3HDMLQ9H3Y0 253 aa21.32■■□□□ 1
TRIM39-209ENST00000428728 MAST3O60307 1309 aa21.31■■□□□ 1
TRIM39-209ENST00000428728 GJA5P36382 358 aa21.31■■□□□ 1
TRIM39-209ENST00000428728 RGS19P49795 217 aa21.31■■□□□ 1
TRIM39-209ENST00000428728 RARSP54136 660 aaKnown RBP21.31■■□□□ 1
TRIM39-209ENST00000428728 HDLBPQ00341 1268 aaKnown RBP21.31■■□□□ 1
TRIM39-209ENST00000428728 ELP3Q9H9T3 547 aa21.31■■□□□ 1
TRIM39-209ENST00000428728 SOX10P56693 466 aa21.3■■□□□ 1
TRIM39-209ENST00000428728 ATP2B3Q16720 1220 aa21.3■■□□□ 1
TRIM39-209ENST00000428728 IFNL1Q8IU54 200 aa21.3■■□□□ 1
TRIM39-209ENST00000428728 TMOD2Q9NZR1 351 aa21.3■■□□□ 1
TRIM39-209ENST00000428728 PA2G4Q9UQ80 394 aaKnown RBP21.3■■□□□ 1
TRIM39-209ENST00000428728 DOCK2Q92608 1830 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 UNCXA6NJT0 531 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 IGF2BP3O00425 579 aaKnown RBP eCLIP21.29■■□□□ 1
TRIM39-209ENST00000428728 ALDH1A1P00352 501 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 ZDHHC15Q96MV8 337 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 CFHR5Q9BXR6 569 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 CEP126Q9P2H0 1117 aa21.29■■□□□ 1
TRIM39-209ENST00000428728 FKTNO75072 461 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 CIAO1O76071 339 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 INHBEP58166 350 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 NOM1Q5C9Z4 860 aaKnown RBP21.28■■□□□ 1
TRIM39-209ENST00000428728 OPTNQ96CV9 577 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 HPS5Q9UPZ3 1129 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 SUGT1Q9Y2Z0 365 aa21.28■■□□□ 1
TRIM39-209ENST00000428728 WDR66Q8TBY9 1149 aa21.27■■□□□ 1
TRIM39-209ENST00000428728 FBXO3Q9UK99 471 aa21.27■■□□□ 1
TRIM39-209ENST00000428728 HDAC5Q9UQL6 1122 aa21.27■■□□□ 1
TRIM39-209ENST00000428728 VGLL4Q14135 290 aa21.26■□□□□ 0.99
TRIM39-209ENST00000428728 PKN2Q16513 984 aaKnown RBP21.26■□□□□ 0.99
TRIM39-209ENST00000428728 APOBEC3HQ6NTF7 200 aaKnown RBP21.26■□□□□ 0.99
TRIM39-209ENST00000428728 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.26■□□□□ 0.99
TRIM39-209ENST00000428728 CNKSR2Q8WXI2 1034 aa21.26■□□□□ 0.99
TRIM39-209ENST00000428728 IL15P40933 162 aaPredicted RBP21.25■□□□□ 0.99
TRIM39-209ENST00000428728 HHIPL2Q6UWX4 724 aa21.25■□□□□ 0.99
TRIM39-209ENST00000428728 CSADQ9Y600 493 aa21.25■□□□□ 0.99
TRIM39-209ENST00000428728 PRDX5P30044 214 aa21.24■□□□□ 0.99
TRIM39-209ENST00000428728 PHKA1P46020 1223 aa21.24■□□□□ 0.99
TRIM39-209ENST00000428728 DIXDC1Q155Q3 683 aa21.24■□□□□ 0.99
TRIM39-209ENST00000428728 INTS3Q68E01 1043 aaKnown RBP21.24■□□□□ 0.99
TRIM39-209ENST00000428728 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.24■□□□□ 0.99
TRIM39-209ENST00000428728 ARHGAP45Q92619 1136 aa21.24■□□□□ 0.99
TRIM39-209ENST00000428728 GNL3LQ9NVN8 582 aaKnown RBP21.24■□□□□ 0.99
TRIM39-209ENST00000428728 TNNQ9UQP3 1299 aa21.24■□□□□ 0.99
TRIM39-209ENST00000428728 RPAP1Q9BWH6 1393 aaPredicted RBP21.23■□□□□ 0.99
TRIM39-209ENST00000428728 GNAI3P08754 354 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 ADORA1P30542 326 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 MAP3K9P80192 1104 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 CRHR2Q13324 411 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 OTUD7BQ6GQQ9 843 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 FAM83AQ86UY5 434 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 FRAT1Q92837 279 aaPredicted RBP21.23■□□□□ 0.99
TRIM39-209ENST00000428728 OTUD5Q96G74 571 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 MRIQ9BWK5 157 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 COPRSQ9NQ92 184 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 DAGLAQ9Y4D2 1042 aa21.23■□□□□ 0.99
TRIM39-209ENST00000428728 SRGAP3O43295 1099 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 LDHBP07195 334 aaKnown RBP21.22■□□□□ 0.99
TRIM39-209ENST00000428728 TRIM27P14373 513 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 FKBP1CQ5VVH2 108 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 FBXO46Q6PJ61 603 aaPredicted RBP21.22■□□□□ 0.99
TRIM39-209ENST00000428728 WRNIP1Q96S55 665 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 PTPN18Q99952 460 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 ZSWIM8A7E2V4 1837 aa21.22■□□□□ 0.99
TRIM39-209ENST00000428728 BCAR3O75815 825 aa21.21■□□□□ 0.99
TRIM39-209ENST00000428728 DENND2AQ9ULE3 1009 aa21.21■□□□□ 0.99
TRIM39-209ENST00000428728 CCL15-CCL14A0A0B4J2E2 113 aa21.2■□□□□ 0.98
TRIM39-209ENST00000428728 CCL15Q16663 113 aa21.2■□□□□ 0.98
TRIM39-209ENST00000428728 CCDC102BQ68D86 513 aa21.2■□□□□ 0.98
TRIM39-209ENST00000428728 CLUAP1Q96AJ1 413 aa21.2■□□□□ 0.98
TRIM39-209ENST00000428728 HOOK2Q96ED9 719 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms