RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LMOD1P29536 600 aaPredicted RBP12.16□□□□□ -0.46
CD44-207ENST00000425428 RBM5P52756 815 aaKnown RBP eCLIP12.16□□□□□ -0.46
CD44-207ENST00000425428 MAGEB6Q8N7X4 407 aa12.16□□□□□ -0.46
CD44-207ENST00000425428 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
CD44-207ENST00000425428 UPF2Q9HAU5 1272 aaKnown RBP12.16□□□□□ -0.46
CD44-207ENST00000425428 TTF2Q9UNY4 1162 aaKnown RBP12.16□□□□□ -0.46
CD44-207ENST00000425428 MYH2Q9UKX2 1941 aa12.16□□□□□ -0.46
CD44-207ENST00000425428 DOCK2Q92608 1830 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 F8W031 263 aaPredicted RBP12.15□□□□□ -0.46
CD44-207ENST00000425428 FZD9O00144 591 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 PSMD14O00487 310 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 VIL1P09327 827 aaKnown RBP12.15□□□□□ -0.46
CD44-207ENST00000425428 PLCG2P16885 1265 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 CYP7A1P22680 504 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 CXCL9Q07325 125 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 UBE3CQ15386 1083 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 TEKT1Q969V4 418 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 AIDAQ96BJ3 306 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 EDC3Q96F86 508 aaKnown RBP12.15□□□□□ -0.46
CD44-207ENST00000425428 ANTXR1Q9H6X2 564 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 PIH1D3Q9NQM4 214 aaKnown RBP12.15□□□□□ -0.46
CD44-207ENST00000425428 MYO5AQ9Y4I1 1855 aaKnown RBP12.15□□□□□ -0.46
CD44-207ENST00000425428 TIAM2Q8IVF5 1701 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 H7C1D1 291 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 DACT2Q5SW24 774 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 GPC2Q8N158 579 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 HELLSQ9NRZ9 838 aa12.15□□□□□ -0.46
CD44-207ENST00000425428 MAST2Q6P0Q8 1798 aa12.15□□□□□ -0.47
CD44-207ENST00000425428 SCN9AQ15858 1988 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 MYO1BO43795 1136 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 REC8O95072 547 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 PRDX5P30044 214 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 ADD2P35612 726 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 HDLBPQ00341 1268 aaKnown RBP12.14□□□□□ -0.47
CD44-207ENST00000425428 MECOMQ03112 1051 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 CWC27Q6UX04 472 aaKnown RBP12.14□□□□□ -0.47
CD44-207ENST00000425428 KIAA0825Q8IV33 1275 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 APPBP2Q92624 585 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 RAD50Q92878 1312 aa12.14□□□□□ -0.47
CD44-207ENST00000425428 PDE6AP16499 860 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 MCMDC2Q4G0Z9 681 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 MRIQ9BWK5 157 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 TMOD2Q9NZR1 351 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 ZNF532Q9HCE3 1301 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 MAGEB6P1A0A0J9YX57 407 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 GNAT2P19087 354 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 CHMLP26374 656 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 AMOTL1Q8IY63 956 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 DPF2Q92785 391 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 NSUN4Q96CB9 384 aaKnown RBP12.13□□□□□ -0.47
CD44-207ENST00000425428 KCNQ5Q9NR82 932 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 SERPINA10Q9UK55 444 aa12.13□□□□□ -0.47
CD44-207ENST00000425428 COL1A1P02452 1464 aaPredicted RBP12.12□□□□□ -0.47
CD44-207ENST00000425428 DLGAP5Q15398 846 aa12.12□□□□□ -0.47
CD44-207ENST00000425428 HHIPL2Q6UWX4 724 aa12.12□□□□□ -0.47
CD44-207ENST00000425428 NACAP1Q9BZK3 213 aa12.12□□□□□ -0.47
CD44-207ENST00000425428 APPP05067 770 aa12.11□□□□□ -0.47
CD44-207ENST00000425428 MCCP23508 829 aa12.11□□□□□ -0.47
CD44-207ENST00000425428 SCNN1DP51172 638 aa12.11□□□□□ -0.47
CD44-207ENST00000425428 NMIQ13287 307 aaPredicted RBP12.11□□□□□ -0.47
CD44-207ENST00000425428 CRNKL1Q9BZJ0 848 aaKnown RBP12.11□□□□□ -0.47
CD44-207ENST00000425428 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
CD44-207ENST00000425428 IQCA1LA6NCM1 817 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 CRKP46108 304 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 GMPSP49915 693 aaPredicted RBP12.1□□□□□ -0.47
CD44-207ENST00000425428 ZMYM1Q5SVZ6 1142 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 CNOT7Q9UIV1 285 aaKnown RBP12.1□□□□□ -0.47
CD44-207ENST00000425428 ZBTB12Q9Y330 459 aaPredicted RBP12.1□□□□□ -0.47
CD44-207ENST00000425428 USP5P45974 858 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 CERS5Q8N5B7 392 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 FAM163AQ96GL9 167 aaPredicted RBP12.1□□□□□ -0.47
CD44-207ENST00000425428 ESYT1Q9BSJ8 1104 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 MXD3Q9BW11 206 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 ANO2Q9NQ90 1003 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 ZNF541Q9H0D2 1346 aa12.1□□□□□ -0.47
CD44-207ENST00000425428 GLTPD2A6NH11 291 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 GPAA1O43292 621 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 BTDP43251 543 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 GOLGB1Q14789 3259 aaKnown RBP12.09□□□□□ -0.47
CD44-207ENST00000425428 DIXDC1Q155Q3 683 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 CFAP100Q494V2 611 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 CCDC171Q6TFL3 1326 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 MICALL2Q8IY33 904 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 ZDHHC15Q96MV8 337 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 AATFQ9NY61 560 aaKnown RBP eCLIP12.09□□□□□ -0.47
CD44-207ENST00000425428 CTNNA3Q9UI47 895 aa12.09□□□□□ -0.47
CD44-207ENST00000425428 COL4A5P29400 1685 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 RPAP1Q9BWH6 1393 aaPredicted RBP12.08□□□□□ -0.48
CD44-207ENST00000425428 MBD4O95243 580 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 MIGA1Q8NAN2 632 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 FAM227BQ96M60 508 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 MYOZ2Q9NPC6 264 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
CD44-207ENST00000425428 GPR75-ASB3A0A0A6YYF3 556 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 TCRBV5S4A2TA0A5A2 114 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 SGSM2O43147 1006 aa12.07□□□□□ -0.48
CD44-207ENST00000425428 DDNO94850 711 aaPredicted RBP12.07□□□□□ -0.48
CD44-207ENST00000425428 TNNI2P48788 182 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms