RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 BCL9O00512 1426 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 LMO7Q8WWI1 1683 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 SRLQ86TD4 932 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 NUTM1Q86Y26 1132 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 TMOD2Q9NZR1 351 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 C6orf229H3BNL8 230 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 PROSER3Q2NL68 480 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 USPL1Q5W0Q7 1092 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 CIAO1O76071 339 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 ZNF287Q9HBT7 754 aa11.3□□□□□ -0.6
USP54-205ENST00000424265 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP54-205ENST00000424265 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.3□□□□□ -0.6
USP54-205ENST00000424265 PES1O00541 588 aaKnown RBP11.3□□□□□ -0.6
USP54-205ENST00000424265 PUM3Q15397 648 aaKnown RBP11.3□□□□□ -0.6
USP54-205ENST00000424265 RBBP5Q15291 538 aaKnown RBP11.29□□□□□ -0.6
USP54-205ENST00000424265 CEP135Q66GS9 1140 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 WWC2Q6AWC2 1192 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 RPUSD2Q8IZ73 545 aaKnown RBP11.29□□□□□ -0.6
USP54-205ENST00000424265 TTC22Q5TAA0 569 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 FILIP1Q7Z7B0 1213 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 GPR108Q9NPR9 543 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 MAFGO15525 162 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 NLRP10Q86W26 655 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 COPRSQ9NQ92 184 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 USP54Q70EL1 1684 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 CTIFO43310 598 aaKnown RBP11.29□□□□□ -0.6
USP54-205ENST00000424265 GNL2Q13823 731 aaKnown RBP11.29□□□□□ -0.6
USP54-205ENST00000424265 CNKSR1Q969H4 720 aa11.29□□□□□ -0.6
USP54-205ENST00000424265 NBPF7P0C2Y1 421 aaPredicted RBP11.28□□□□□ -0.6
USP54-205ENST00000424265 TNNQ9UQP3 1299 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 CARMIL3Q8ND23 1372 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 PEAK1Q9H792 1746 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 IGHDP01880 384 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 CC2D2BQ6DHV5 1058 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 CCDC8Q9H0W5 538 aaPredicted RBP11.28□□□□□ -0.6
USP54-205ENST00000424265 EIF5P55010 431 aaKnown RBP11.28□□□□□ -0.6
USP54-205ENST00000424265 DZIP1Q86YF9 867 aaKnown RBP11.28□□□□□ -0.6
USP54-205ENST00000424265 SNX21Q969T3 373 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 AIDAQ96BJ3 306 aa11.28□□□□□ -0.6
USP54-205ENST00000424265 H7C1W4 665 aa11.27□□□□□ -0.6
USP54-205ENST00000424265 PDE1AP54750 535 aa11.27□□□□□ -0.6
USP54-205ENST00000424265 ISCA1Q9BUE6 129 aa11.27□□□□□ -0.6
USP54-205ENST00000424265 SMARCA5O60264 1052 aaPredicted RBP11.27□□□□□ -0.61
USP54-205ENST00000424265 ANKRD1Q15327 319 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 TTC19Q6DKK2 380 aaPredicted RBP11.27□□□□□ -0.61
USP54-205ENST00000424265 LPIN2Q92539 896 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 CEP89Q96ST8 783 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 DENND2AQ9ULE3 1009 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 KCNQ2O43526 872 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 IDH1O75874 414 aaKnown RBP11.27□□□□□ -0.61
USP54-205ENST00000424265 BAG3O95817 575 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 FBXO18Q8NFZ0 1043 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 SH3GL3Q99963 347 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 CAND2O75155 1236 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 HSP90B2PQ58FF3 399 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 SLC16A10Q8TF71 515 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 ERO1AQ96HE7 468 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 VEZTQ9HBM0 779 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 SPTLC3Q9NUV7 552 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 RAD50Q92878 1312 aa11.27□□□□□ -0.61
USP54-205ENST00000424265 PRAMEF22A3QJZ6 481 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 RPS8P62241 208 aaKnown RBP11.26□□□□□ -0.61
USP54-205ENST00000424265 MTX1Q13505 466 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 TBC1D22AQ8WUA7 517 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 ZC3H12CQ9C0D7 883 aaKnown RBP11.26□□□□□ -0.61
USP54-205ENST00000424265 BOLA2Q9H3K6 86 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 ANAPC4Q9UJX5 808 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 A0A1B0GUA9 196 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 HCLS1P14317 486 aaPredicted RBP11.26□□□□□ -0.61
USP54-205ENST00000424265 ELF2Q15723 593 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 KIAA1328Q86T90 577 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 GOPCQ9HD26 462 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 PTPN14Q15678 1187 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 FAM182BQ5T319 152 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 SERPINB2P05120 415 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 AKAP17AQ02040 695 aaKnown RBP11.26□□□□□ -0.61
USP54-205ENST00000424265 PRPF38AQ8NAV1 312 aaKnown RBP11.26□□□□□ -0.61
USP54-205ENST00000424265 ST7Q9NRC1 585 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 GGA1Q9UJY5 639 aa11.26□□□□□ -0.61
USP54-205ENST00000424265 BBOX1O75936 387 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 PSMD2Q13200 908 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 U3KPZ7 1027 aaPredicted RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 MAST3O60307 1309 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 GCKP35557 465 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 TACO1Q9BSH4 297 aaKnown RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 HDAC9Q9UKV0 1011 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 PLSCR1O15162 318 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 SLU7O95391 586 aaKnown RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 TNNI3KQ59H18 835 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 NAIF1Q69YI7 327 aaPredicted RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 ABCF2Q9UG63 623 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 FPGT-TNNI3KV9GXZ4 949 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 EIF3JO75822 258 aaKnown RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 PLCG2P16885 1265 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 IBSPP21815 317 aaPredicted RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 ATP2B4P23634 1241 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 IMMTQ16891 758 aaKnown RBP11.25□□□□□ -0.61
USP54-205ENST00000424265 SKIDA1Q1XH10 827 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 PLA2G12BQ9BX93 195 aa11.25□□□□□ -0.61
USP54-205ENST00000424265 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms