RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RIPOR2Q9Y4F9 1068 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 ECM2O94769 699 aaPredicted RBP10.25□□□□□ -0.77
VIM-202ENST00000421459 EN2P19622 333 aaPredicted RBP10.25□□□□□ -0.77
VIM-202ENST00000421459 UBE4AQ14139 1066 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 NCBP3Q53F19 620 aaKnown RBP10.25□□□□□ -0.77
VIM-202ENST00000421459 FBXO33Q7Z6M2 555 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 ANKRD13AQ8IZ07 590 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 BRI3BPQ8WY22 251 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 SERPINA10Q9UK55 444 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 PTPN22Q9Y2R2 807 aa10.25□□□□□ -0.77
VIM-202ENST00000421459 TESPA1A2RU30 521 aaPredicted RBP10.24□□□□□ -0.77
VIM-202ENST00000421459 ALDH1L1O75891 902 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 MYCP01106 439 aaPredicted RBP10.24□□□□□ -0.77
VIM-202ENST00000421459 BCAMP50895 628 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 SP3Q02447 781 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 VGLL4Q14135 290 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 FAM43AQ8N2R8 423 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 ANKRD44Q8N8A2 993 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 EFCC1Q9HA90 598 aa10.24□□□□□ -0.77
VIM-202ENST00000421459 CCL15-CCL14A0A0B4J2E2 113 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 ANP32CO43423 234 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 CCL15Q16663 113 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 METTL24Q5JXM2 366 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 MRPL50Q8N5N7 158 aaKnown RBP10.23□□□□□ -0.77
VIM-202ENST00000421459 ZKSCAN4Q969J2 545 aaPredicted RBP10.23□□□□□ -0.77
VIM-202ENST00000421459 OTUD5Q96G74 571 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 ERO1AQ96HE7 468 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 A0A1B0GUL6 1792 aa10.23□□□□□ -0.77
VIM-202ENST00000421459 UNCXA6NJT0 531 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 FRAT2O75474 233 aaPredicted RBP10.22□□□□□ -0.77
VIM-202ENST00000421459 MAP3K9P80192 1104 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 OTUD7BQ6GQQ9 843 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 VPS37DQ86XT2 251 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 VGLL2Q8N8G2 317 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.22□□□□□ -0.77
VIM-202ENST00000421459 ARHGAP39Q9C0H5 1083 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 PTCH2Q9Y6C5 1203 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 UTYO14607 1347 aa10.22□□□□□ -0.77
VIM-202ENST00000421459 TNFAIP1Q13829 316 aa10.21□□□□□ -0.77
VIM-202ENST00000421459 TAF1CQ15572 869 aaPredicted RBP10.21□□□□□ -0.77
VIM-202ENST00000421459 RABL6Q3YEC7 729 aaPredicted RBP10.21□□□□□ -0.77
VIM-202ENST00000421459 APOBEC3HQ6NTF7 200 aaKnown RBP10.21□□□□□ -0.77
VIM-202ENST00000421459 MIGA2Q7L4E1 593 aa10.21□□□□□ -0.77
VIM-202ENST00000421459 SNCAIPQ9Y6H5 919 aa10.21□□□□□ -0.77
VIM-202ENST00000421459 MROH5Q6ZUA9 1318 aa10.21□□□□□ -0.78
VIM-202ENST00000421459 BTBD19C9JJ37 291 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 PDE8BO95263 885 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 TNNI2P48788 182 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 GTF2A2P52657 109 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 CAVIN4Q5BKX8 364 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 INTS3Q68E01 1043 aaKnown RBP10.2□□□□□ -0.78
VIM-202ENST00000421459 TEKT1Q969V4 418 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 ARMC5Q96C12 935 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 WRNIP1Q96S55 665 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 USP44Q9H0E7 712 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 PCDH10Q9P2E7 1040 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 CSADQ9Y600 493 aa10.2□□□□□ -0.78
VIM-202ENST00000421459 ZNF521Q96K83 1311 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 IRF6O14896 467 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 FGFR2P21802 821 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 HABP4Q5JVS0 413 aaKnown RBP10.19□□□□□ -0.78
VIM-202ENST00000421459 SH3TC2Q8TF17 1288 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 SSH1Q8WYL5 1049 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 ZNF333Q96JL9 665 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 ZFYVE28Q9HCC9 887 aa10.19□□□□□ -0.78
VIM-202ENST00000421459 OTOFQ9HC10 1997 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 ZNF316A6NFI3 1004 aaPredicted RBP10.18□□□□□ -0.78
VIM-202ENST00000421459 SPDYE5A6NIY4 337 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 SLURP2P0DP57 97 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 CTGFP29279 349 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 INPP5BP32019 993 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 RFX5P48382 616 aaPredicted RBP10.18□□□□□ -0.78
VIM-202ENST00000421459 TCP10Q12799 353 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 DIXDC1Q155Q3 683 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 ZFPM1Q8IX07 1006 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 ZDHHC15Q96MV8 337 aa10.18□□□□□ -0.78
VIM-202ENST00000421459 ECM29Q5VYK3 1845 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 HDLBPQ00341 1268 aaKnown RBP10.17□□□□□ -0.78
VIM-202ENST00000421459 NFIAQ12857 509 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 PUM3Q15397 648 aaKnown RBP10.17□□□□□ -0.78
VIM-202ENST00000421459 SLC4A8Q2Y0W8 1093 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 SLC9C1Q4G0N8 1177 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 ATG9AQ7Z3C6 839 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 ERO1BQ86YB8 467 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.17□□□□□ -0.78
VIM-202ENST00000421459 TBC1D22AQ8WUA7 517 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 CDCA7LQ96GN5 454 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 SIL1Q9H173 461 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 CPA4Q9UI42 421 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 PDE4DIPQ5VU43 2346 aa10.17□□□□□ -0.78
VIM-202ENST00000421459 EYA2O00167 538 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 TLR2O60603 784 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 IFIT1P09914 478 aaKnown RBP10.16□□□□□ -0.78
VIM-202ENST00000421459 CETPP11597 493 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 PRDX5P30044 214 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 SNAPC2Q13487 334 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 CDC42EP5Q6NZY7 148 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 HHIPL2Q6UWX4 724 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 FAM83AQ86UY5 434 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 TMEM106CQ9BVX2 250 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 194.2 ms