RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 PTPN22Q9Y2R2 807 aa16.34■□□□□ 0.21
LINC00339-203ENST00000420503 CHAF1AQ13111 956 aaPredicted RBP16.33■□□□□ 0.2
LINC00339-203ENST00000420503 VGLL4Q14135 290 aa16.33■□□□□ 0.2
LINC00339-203ENST00000420503 LRRC24Q50LG9 513 aa16.33■□□□□ 0.2
LINC00339-203ENST00000420503 ANKRD13AQ8IZ07 590 aa16.33■□□□□ 0.2
LINC00339-203ENST00000420503 PCDH10Q9P2E7 1040 aa16.33■□□□□ 0.2
LINC00339-203ENST00000420503 RBBP6Q7Z6E9 1792 aaKnown RBP16.33■□□□□ 0.2
LINC00339-203ENST00000420503 TESPA1A2RU30 521 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-203ENST00000420503 ECM2O94769 699 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-203ENST00000420503 MYCP01106 439 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-203ENST00000420503 HIBADHP31937 336 aaKnown RBP16.32■□□□□ 0.2
LINC00339-203ENST00000420503 CRKP46108 304 aa16.32■□□□□ 0.2
LINC00339-203ENST00000420503 INHBEP58166 350 aa16.32■□□□□ 0.2
LINC00339-203ENST00000420503 WDR63Q8IWG1 891 aa16.32■□□□□ 0.2
LINC00339-203ENST00000420503 FAM43AQ8N2R8 423 aa16.32■□□□□ 0.2
LINC00339-203ENST00000420503 KLHDC4Q8TBB5 520 aa16.32■□□□□ 0.2
LINC00339-203ENST00000420503 C9orf78Q9NZ63 289 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-203ENST00000420503 ANKRD44Q8N8A2 993 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 OTUD5Q96G74 571 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 ERO1AQ96HE7 468 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 ARHGAP39Q9C0H5 1083 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 BICC1Q9H694 974 aaKnown RBP16.31■□□□□ 0.2
LINC00339-203ENST00000420503 EFCC1Q9HA90 598 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 SERPINA10Q9UK55 444 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 RIPOR2Q9Y4F9 1068 aa16.31■□□□□ 0.2
LINC00339-203ENST00000420503 CCL15-CCL14A0A0B4J2E2 113 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 SP3Q02447 781 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 UBE4AQ14139 1066 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 CCL15Q16663 113 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.2
LINC00339-203ENST00000420503 ARMC5Q96C12 935 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 PTCH2Q9Y6C5 1203 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 CEP290O15078 2479 aa16.3■□□□□ 0.2
LINC00339-203ENST00000420503 ALDH1L1O75891 902 aa16.29■□□□□ 0.2
LINC00339-203ENST00000420503 FBXO33Q7Z6M2 555 aa16.29■□□□□ 0.2
LINC00339-203ENST00000420503 SRCIN1Q9C0H9 1055 aa16.29■□□□□ 0.2
LINC00339-203ENST00000420503 SNCAIPQ9Y6H5 919 aa16.29■□□□□ 0.2
LINC00339-203ENST00000420503 BCAMP50895 628 aa16.28■□□□□ 0.2
LINC00339-203ENST00000420503 TAF1CQ15572 869 aaPredicted RBP16.28■□□□□ 0.2
LINC00339-203ENST00000420503 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
LINC00339-203ENST00000420503 VGLL2Q8N8G2 317 aa16.28■□□□□ 0.2
LINC00339-203ENST00000420503 ZKSCAN4Q969J2 545 aaPredicted RBP16.28■□□□□ 0.2
LINC00339-203ENST00000420503 UNCXA6NJT0 531 aa16.27■□□□□ 0.2
LINC00339-203ENST00000420503 MAP3K9P80192 1104 aa16.27■□□□□ 0.2
LINC00339-203ENST00000420503 TNFAIP1Q13829 316 aa16.27■□□□□ 0.2
LINC00339-203ENST00000420503 HABP4Q5JVS0 413 aaKnown RBP16.27■□□□□ 0.2
LINC00339-203ENST00000420503 ZNF333Q96JL9 665 aa16.27■□□□□ 0.2
LINC00339-203ENST00000420503 UTYO14607 1347 aa16.26■□□□□ 0.19
LINC00339-203ENST00000420503 TRIOBPQ9H2D6 2365 aa16.26■□□□□ 0.19
LINC00339-203ENST00000420503 RABL6Q3YEC7 729 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-203ENST00000420503 METTL24Q5JXM2 366 aa16.26■□□□□ 0.19
LINC00339-203ENST00000420503 OTUD7BQ6GQQ9 843 aa16.26■□□□□ 0.19
LINC00339-203ENST00000420503 SH3TC2Q8TF17 1288 aa16.26■□□□□ 0.19
LINC00339-203ENST00000420503 SPDYE5A6NIY4 337 aa16.25■□□□□ 0.19
LINC00339-203ENST00000420503 BTBD19C9JJ37 291 aa16.25■□□□□ 0.19
LINC00339-203ENST00000420503 CTGFP29279 349 aa16.25■□□□□ 0.19
LINC00339-203ENST00000420503 INTS3Q68E01 1043 aaKnown RBP16.25■□□□□ 0.19
LINC00339-203ENST00000420503 APOBEC3HQ6NTF7 200 aaKnown RBP16.25■□□□□ 0.19
LINC00339-203ENST00000420503 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
LINC00339-203ENST00000420503 WRNIP1Q96S55 665 aa16.25■□□□□ 0.19
LINC00339-203ENST00000420503 MROH5Q6ZUA9 1318 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 IRF6O14896 467 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 INPP5BP32019 993 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 MIGA2Q7L4E1 593 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 VPS37DQ86XT2 251 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 MRPL50Q8N5N7 158 aaKnown RBP16.24■□□□□ 0.19
LINC00339-203ENST00000420503 CSADQ9Y600 493 aa16.24■□□□□ 0.19
LINC00339-203ENST00000420503 GTF2A2P52657 109 aa16.23■□□□□ 0.19
LINC00339-203ENST00000420503 TEKT1Q969V4 418 aa16.23■□□□□ 0.19
LINC00339-203ENST00000420503 ZFYVE28Q9HCC9 887 aa16.23■□□□□ 0.19
LINC00339-203ENST00000420503 ZNF521Q96K83 1311 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 MYH13Q9UKX3 1938 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 FRAT2O75474 233 aaPredicted RBP16.22■□□□□ 0.19
LINC00339-203ENST00000420503 PDE8BO95263 885 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 TNNI2P48788 182 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 DIXDC1Q155Q3 683 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 SLC9C1Q4G0N8 1177 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 ZDHHC15Q96MV8 337 aa16.22■□□□□ 0.19
LINC00339-203ENST00000420503 SLURP2P0DP57 97 aa16.21■□□□□ 0.19
LINC00339-203ENST00000420503 FGFR2P21802 821 aa16.21■□□□□ 0.19
LINC00339-203ENST00000420503 RFX5P48382 616 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-203ENST00000420503 NFIAQ12857 509 aa16.21■□□□□ 0.19
LINC00339-203ENST00000420503 USP44Q9H0E7 712 aa16.21■□□□□ 0.19
LINC00339-203ENST00000420503 CPA4Q9UI42 421 aa16.21■□□□□ 0.19
LINC00339-203ENST00000420503 TLR2O60603 784 aa16.2■□□□□ 0.18
LINC00339-203ENST00000420503 FXR1P51114 621 aaKnown RBP eCLIP16.2■□□□□ 0.18
LINC00339-203ENST00000420503 LACTBP83111 547 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-203ENST00000420503 TCP10Q12799 353 aa16.2■□□□□ 0.18
LINC00339-203ENST00000420503 ERO1BQ86YB8 467 aa16.2■□□□□ 0.18
LINC00339-203ENST00000420503 ZFPM1Q8IX07 1006 aa16.2■□□□□ 0.18
LINC00339-203ENST00000420503 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-203ENST00000420503 SSH1Q8WYL5 1049 aa16.2■□□□□ 0.18
LINC00339-203ENST00000420503 AK9Q5TCS8 1911 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 ANP32CO43423 234 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 HDLBPQ00341 1268 aaKnown RBP16.19■□□□□ 0.18
LINC00339-203ENST00000420503 MOGSQ13724 837 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 MTFR1Q15390 333 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 SLC4A8Q2Y0W8 1093 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 CAVIN4Q5BKX8 364 aa16.19■□□□□ 0.18
LINC00339-203ENST00000420503 TBC1D22AQ8WUA7 517 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms