RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 MYO1BO43795 1136 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 EIF5P55010 431 aaKnown RBP9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 MYL5Q02045 173 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 TBX2Q13207 712 aaPredicted RBP9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 BEND3Q5T5X7 828 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 TOGARAM2Q6ZUX3 1019 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 NUDT16Q96DE0 195 aaKnown RBP9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 FSD1Q9BTV5 496 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 FAM107BQ9H098 131 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 CCDC61Q9Y6R9 512 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 RGPD5Q99666 1765 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 SALL1Q9NSC2 1324 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 TMEM232C9JQI7 657 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 CASP8Q14790 479 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 CEP112Q8N8E3 955 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 LINC00301Q8NCQ3 95 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 ZSWIM4Q9H7M6 989 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 SUGCTQ9HAC7 445 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 DONSONQ9NYP3 566 aa9.22□□□□□ -0.93
HMGXB4-202ENST00000418170 ZNF202O95125 648 aa9.21□□□□□ -0.93
HMGXB4-202ENST00000418170 MYCNP04198 464 aaPredicted RBP9.21□□□□□ -0.93
HMGXB4-202ENST00000418170 HDGFL1Q5TGJ6 251 aa9.21□□□□□ -0.93
HMGXB4-202ENST00000418170 KCNG4Q8TDN1 519 aa9.21□□□□□ -0.93
HMGXB4-202ENST00000418170 WDHD1O75717 1129 aaPredicted RBP9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 CCDC102AQ96A19 550 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 FAM204AQ9H8W3 233 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 GBP3Q9H0R5 595 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 ACBD3Q9H3P7 528 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 INTS13Q9NVM9 706 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 CDC23Q9UJX2 597 aa9.21□□□□□ -0.94
HMGXB4-202ENST00000418170 YEATS4O95619 227 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 WWC2Q6AWC2 1192 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TC2NQ8N9U0 490 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 BANK1Q8NDB2 785 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TUBE1Q9UJT0 475 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 SBNO1A3KN83 1393 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 MAP2K2P36507 400 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 STK38Q15208 465 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 SF3A1Q15459 793 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TAF7Q15545 349 aaPredicted RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 MICALL1Q8N3F8 863 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 ANKRD20A12PQ8NF67 263 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 DNAAF4Q8WXU2 420 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 BABAM1Q9NWV8 329 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 PUF60Q9UHX1 559 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 KIF1CO43896 1103 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 PHACTR2O75167 634 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TUBBP07437 444 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TUBB2AQ13885 445 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 EAF2Q96CJ1 260 aaPredicted RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 TUBB2BQ9BVA1 445 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 PLEKHA4Q9H4M7 779 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 POLR3EQ9NVU0 708 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 COL15A1P39059 1388 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 NCAPD2Q15021 1401 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 ATP6V1AP38606 617 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 VSNL1P62760 191 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 GUCY1B3Q02153 619 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 KARSQ15046 597 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 MRPL44Q9H9J2 332 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 PA2G4Q9UQ80 394 aaKnown RBP9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 CLIC4Q9Y696 253 aa9.2□□□□□ -0.94
HMGXB4-202ENST00000418170 ERLIN2O94905 339 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 PTPN21Q16825 1174 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 KAT2BQ92831 832 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 SEC62Q99442 399 aaKnown RBP9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 LRRC2Q9BYS8 371 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 LMO7Q8WWI1 1683 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 CARMIL3Q8ND23 1372 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 CCDC196A0A1B0GTZ2 297 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 SPTLC2O15270 562 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 CYP21A2P08686 494 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 AARSP49588 968 aaKnown RBP eCLIP9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 ISM2Q6H9L7 571 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 DESI2Q9BSY9 194 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 IRX2Q9BZI1 471 aaPredicted RBP9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 BOLA2Q9H3K6 86 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 U3KPZ7 1027 aaPredicted RBP9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 NFAT5O94916 1531 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 PI4KAP2A4QPH2 592 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 LRRIQ3A6PVS8 624 aaPredicted RBP9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 GNAT3A8MTJ3 354 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 CCDC175P0C221 793 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 PFKFB1P16118 471 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 PI4KAP1Q8N8J0 262 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 AFAP1L1Q8TED9 768 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 VIPAS39Q9H9C1 493 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 FANCLQ9NW38 375 aa9.19□□□□□ -0.94
HMGXB4-202ENST00000418170 RNF40O75150 1001 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 SASH1O94885 1247 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 PRPF6O94906 941 aaKnown RBP9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 HMGB1P09429 215 aaKnown RBP9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 CMA1P23946 247 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 RPAINQ86UA6 219 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 AGXT2Q9BYV1 514 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 USP31Q70CQ4 1352 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 MED1Q15648 1581 aaPredicted RBP9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 COL18A1P39060 1754 aa9.18□□□□□ -0.94
HMGXB4-202ENST00000418170 EXOC5O00471 708 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms