RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 CERS5Q8N5B7 392 aa11.66□□□□□ -0.54
RIF1-202ENST00000414861 NSUN4Q96CB9 384 aaKnown RBP11.66□□□□□ -0.54
RIF1-202ENST00000414861 TBC1D32Q96NH3 1257 aa11.66□□□□□ -0.54
RIF1-202ENST00000414861 HELLSQ9NRZ9 838 aa11.66□□□□□ -0.54
RIF1-202ENST00000414861 CCDC171Q6TFL3 1326 aa11.66□□□□□ -0.54
RIF1-202ENST00000414861 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
RIF1-202ENST00000414861 LRRFIP1Q32MZ4 808 aaKnown RBP11.65□□□□□ -0.54
RIF1-202ENST00000414861 ZSCAN25Q6NSZ9 544 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 LARGE2Q8N3Y3 721 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 C22orf23Q9BZE7 217 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 RBM19Q9Y4C8 960 aaKnown RBP11.65□□□□□ -0.54
RIF1-202ENST00000414861 SBF1O95248 1867 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 VPS53Q5VIR6 699 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 TTLL5Q6EMB2 1281 aa11.65□□□□□ -0.54
RIF1-202ENST00000414861 UPF2Q9HAU5 1272 aaKnown RBP11.65□□□□□ -0.54
RIF1-202ENST00000414861 FOXP2O15409 715 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 LDHBP07195 334 aaKnown RBP11.64□□□□□ -0.55
RIF1-202ENST00000414861 CYP7A1P22680 504 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 ZGPATQ8N5A5 531 aaKnown RBP11.64□□□□□ -0.55
RIF1-202ENST00000414861 LTBP3Q9NS15 1303 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 GPAA1O43292 621 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 YBX3P16989 372 aaKnown RBP eCLIP11.64□□□□□ -0.55
RIF1-202ENST00000414861 DIXDC1Q155Q3 683 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 NAA16Q6N069 864 aaPredicted RBP11.64□□□□□ -0.55
RIF1-202ENST00000414861 DZIP1Q86YF9 867 aaKnown RBP11.64□□□□□ -0.55
RIF1-202ENST00000414861 MIGA1Q8NAN2 632 aa11.64□□□□□ -0.55
RIF1-202ENST00000414861 DACT2Q5SW24 774 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 TBC1D22AQ8WUA7 517 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 DICER1Q9UPY3 1922 aaKnown RBP11.63□□□□□ -0.55
RIF1-202ENST00000414861 MBD4O95243 580 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 RBM25P49756 843 aaKnown RBP11.63□□□□□ -0.55
RIF1-202ENST00000414861 SPTY2D1Q68D10 685 aaPredicted RBP11.63□□□□□ -0.55
RIF1-202ENST00000414861 KIAA1211Q6ZU35 1233 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 LCORLQ8N3X6 602 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 CDK5RAP2Q96SN8 1893 aa11.63□□□□□ -0.55
RIF1-202ENST00000414861 USP17L3A6NCW0 530 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 USP17L4A6NCW7 530 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 STRIP1Q5VSL9 837 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 USP17L1Q7RTZ2 530 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 NIM1KQ8IY84 436 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 VPS33BQ9H267 617 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 ARMT1Q9H993 441 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 PALD1Q9ULE6 856 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 F8W031 263 aaPredicted RBP11.62□□□□□ -0.55
RIF1-202ENST00000414861 RAD17O75943 681 aa11.62□□□□□ -0.55
RIF1-202ENST00000414861 RIOK1Q9BRS2 568 aaKnown RBP11.62□□□□□ -0.55
RIF1-202ENST00000414861 BAZ2AQ9UIF9 1905 aaKnown RBP11.62□□□□□ -0.55
RIF1-202ENST00000414861 HSPD1P10809 573 aaKnown RBP11.61□□□□□ -0.55
RIF1-202ENST00000414861 DYNLL1P63167 89 aaKnown RBP11.61□□□□□ -0.55
RIF1-202ENST00000414861 MAP4K1Q92918 833 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 AIDAQ96BJ3 306 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 STRBPQ96SI9 672 aaKnown RBP11.61□□□□□ -0.55
RIF1-202ENST00000414861 KIF2CQ99661 725 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 ZNRF3Q9ULT6 936 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 RBM8AQ9Y5S9 174 aaKnown RBP11.61□□□□□ -0.55
RIF1-202ENST00000414861 PSMD14O00487 310 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 EIF5BO60841 1220 aaKnown RBP11.61□□□□□ -0.55
RIF1-202ENST00000414861 ARHGAP27Q6ZUM4 889 aa11.61□□□□□ -0.55
RIF1-202ENST00000414861 AATFQ9NY61 560 aaKnown RBP eCLIP11.61□□□□□ -0.55
RIF1-202ENST00000414861 PRKAB2O43741 272 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 HSPA4P34932 840 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 KIAA0825Q8IV33 1275 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 TTF2Q9UNY4 1162 aaKnown RBP11.6□□□□□ -0.55
RIF1-202ENST00000414861 TAF6LQ9Y6J9 622 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 MROH7-TTC4A0A0A0MT08 1334 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 LAMA4Q16363 1823 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 MAGEB6P1A0A0J9YX57 407 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 SCNN1DP51172 638 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 DSCC1Q9BVC3 393 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 EPB41L4AQ9HCS5 686 aaPredicted RBP11.6□□□□□ -0.55
RIF1-202ENST00000414861 SUGT1Q9Y2Z0 365 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 TIAM2Q8IVF5 1701 aa11.6□□□□□ -0.55
RIF1-202ENST00000414861 EPB41L2O43491 1005 aaKnown RBP11.59□□□□□ -0.55
RIF1-202ENST00000414861 FKBP1AP62942 108 aaKnown RBP11.59□□□□□ -0.55
RIF1-202ENST00000414861 CXCL9Q07325 125 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 NECTIN1Q15223 517 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 RASEFQ8IZ41 740 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 JDP2Q8WYK2 163 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 GAKO14976 1311 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 SDR42E1Q8WUS8 393 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 ZBTB12Q9Y330 459 aaPredicted RBP11.59□□□□□ -0.55
RIF1-202ENST00000414861 DAGLAQ9Y4D2 1042 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 PCDHAC2Q9Y5I4 1007 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 FOCADQ5VW36 1801 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 ECM29Q5VYK3 1845 aa11.59□□□□□ -0.55
RIF1-202ENST00000414861 IGSF3O75054 1194 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 VIL1P09327 827 aaKnown RBP11.58□□□□□ -0.56
RIF1-202ENST00000414861 GSTO1P78417 241 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 CREB3L3Q68CJ9 461 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 RSBN1LQ6PCB5 846 aaPredicted RBP11.58□□□□□ -0.56
RIF1-202ENST00000414861 NAV1Q8NEY1 1877 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 GSG1L2A8MUP6 293 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 BTDP43251 543 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 TMED8Q6PL24 325 aaPredicted RBP11.58□□□□□ -0.56
RIF1-202ENST00000414861 GMLQ99445 158 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 SLC4A4Q9Y6R1 1079 aa11.58□□□□□ -0.56
RIF1-202ENST00000414861 U3KPZ7 1027 aaPredicted RBP11.58□□□□□ -0.56
RIF1-202ENST00000414861 ZNF541Q9H0D2 1346 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 SLC27A2O14975 620 aa11.57□□□□□ -0.56
RIF1-202ENST00000414861 FGAP02671 866 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms