RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 UBXN1Q04323 297 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 PODNQ7Z5L7 613 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 GSDMBQ8TAX9 411 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 POLE3Q9NRF9 147 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 BIN1O00499 593 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 TRIM6Q9C030 488 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 CNOT10Q9H9A5 744 aaKnown RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 CALML3P27482 149 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 MAGEA9P43362 315 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 NCOA7Q8NI08 942 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 MAIP1Q8WWC4 291 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 PUS7Q96PZ0 661 aaKnown RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 NMIQ13287 307 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 BCL2L12Q9HB09 334 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 METAP2P50579 478 aaKnown RBP eCLIP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 RUNDC3BQ96NL0 473 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 OPHN1O60890 802 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 SPTY2D1Q68D10 685 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 ARHGAP18Q8N392 663 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 TXLNGQ9NUQ3 528 aa14.43□□□□□ -0.1
COL6A3-206ENST00000409809 TPX2Q9ULW0 747 aaKnown RBP14.43□□□□□ -0.1
COL6A3-206ENST00000409809 CNPY2Q9Y2B0 182 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 SPTLC2O15270 562 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 TCERG1LQ5VWI1 586 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 DNAJC25Q9H1X3 360 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 ECHDC1Q9NTX5 307 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 EPS15L1Q9UBC2 864 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 MAN1A2O60476 641 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 TSR2Q969E8 191 aaKnown RBP14.42□□□□□ -0.1
COL6A3-206ENST00000409809 KRT23Q9C075 422 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 EPRSP07814 1512 aaKnown RBP14.42□□□□□ -0.1
COL6A3-206ENST00000409809 ASXL1Q8IXJ9 1541 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 UTP14AQ9BVJ6 771 aaKnown RBP14.42□□□□□ -0.1
COL6A3-206ENST00000409809 KLHDC4Q8TBB5 520 aa14.42□□□□□ -0.1
COL6A3-206ENST00000409809 MIS12Q9H081 205 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 LZTFL1Q9NQ48 299 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 SERPINA10Q9UK55 444 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 TOPBP1Q92547 1522 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 TTC19Q6DKK2 380 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-206ENST00000409809 RRAGBQ5VZM2 374 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 LLPHQ9BRT6 129 aaKnown RBP14.41□□□□□ -0.1
COL6A3-206ENST00000409809 STK24Q9Y6E0 443 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 SAAL1Q96ER3 474 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 GOLGA8AA7E2F4 631 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 LMNB1P20700 586 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 ZNF75DP51815 510 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 INSRP06213 1382 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 GNAQP50148 359 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 SUN1O94901 812 aa14.41□□□□□ -0.1
COL6A3-206ENST00000409809 ZNF830Q96NB3 372 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-206ENST00000409809 RPL13P26373 211 aaKnown RBP14.4□□□□□ -0.1
COL6A3-206ENST00000409809 TMPOP42166 694 aaKnown RBP14.4□□□□□ -0.1
COL6A3-206ENST00000409809 TRIM58Q8NG06 486 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 IFNKQ9P0W0 207 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 PRXQ9BXM0 1461 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 ATF3P18847 181 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 TSC22D3Q99576 134 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 TTC36A6NLP5 189 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 PEX19P40855 299 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 SYNCQ9H7C4 482 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 PDE6BP35913 854 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 SYCP3Q8IZU3 236 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 KIFAP3Q92845 792 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 RRAGDQ9NQL2 400 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-206ENST00000409809 DAAM1Q9Y4D1 1078 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 TTC41PQ6P2S7 1318 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 PCYT1AP49585 367 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 IMPG2Q9BZV3 1241 aa14.4□□□□□ -0.1
COL6A3-206ENST00000409809 ZFXP17010 805 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC84Q86UT8 332 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 NME8Q8N427 588 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 HAUS2Q9NVX0 235 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 LRP2BPQ9P2M1 347 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 TRIM37O94972 964 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 RNF216Q9NWF9 866 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ORC3Q9UBD5 711 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 YY1AP1Q9H869 796 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 PUF60Q9UHX1 559 aaKnown RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ERCC5P28715 1186 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ZC3H6P61129 1189 aaKnown RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 SDCCAG3Q96C92 435 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 RABEP2Q9H5N1 569 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 PAIP2BQ9ULR5 123 aaKnown RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 MAGI1Q96QZ7 1491 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ANKRD20A4Q4UJ75 823 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ANKRD20A8PQ5CZ79 823 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ANKRD20A2Q5SQ80 823 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 ANKRD20A1Q5TYW2 823 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 HSPA1LP34931 641 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC124Q96CT7 223 aaKnown RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 HSPA8P11142 646 aaKnown RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 PDE4BQ07343 736 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 PPP4R1Q8TF05 950 aa14.39□□□□□ -0.11
COL6A3-206ENST00000409809 N4BP2L2Q92802 583 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-206ENST00000409809 CCDC169A6NNP5 214 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 PPP2R5AQ15172 486 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 LEO1Q8WVC0 666 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 RTL9Q8NET4 1388 aa14.38□□□□□ -0.11
COL6A3-206ENST00000409809 LMOD1P29536 600 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-206ENST00000409809 CDC25BP30305 580 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms