RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RASGRF1Q13972 1273 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 HS1BP3Q53T59 392 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 SLC4A4Q9Y6R1 1079 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 DDB1Q16531 1140 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 LMOD1P29536 600 aaPredicted RBP15.59■□□□□ 0.09
VPS54-203ENST00000409558 CDC27P30260 824 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 TPD52L1Q16890 204 aaPredicted RBP15.59■□□□□ 0.09
VPS54-203ENST00000409558 CCDC144BQ3MJ40 725 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 TSGA10IPQ3SY00 556 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 ILDR1Q86SU0 546 aaPredicted RBP15.59■□□□□ 0.09
VPS54-203ENST00000409558 TMX1Q9H3N1 280 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 PRKCSHP14314 528 aaPredicted RBP15.59■□□□□ 0.09
VPS54-203ENST00000409558 NEDD4P46934 1319 aa15.59■□□□□ 0.09
VPS54-203ENST00000409558 BAZ2BQ9UIF8 2168 aaKnown RBP15.59■□□□□ 0.09
VPS54-203ENST00000409558 SLC51AQ86UW1 340 aa15.58■□□□□ 0.09
VPS54-203ENST00000409558 CCDC69A6NI79 296 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 GOLGA8FQ08AF8 430 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 GOLGA8DPQ0D2H9 430 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 NAA30Q147X3 362 aaPredicted RBP15.58■□□□□ 0.08
VPS54-203ENST00000409558 PALLDQ8WX93 1383 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 CRKLP46109 303 aaKnown RBP15.58■□□□□ 0.08
VPS54-203ENST00000409558 TRIM29Q14134 588 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 SPATA5Q8NB90 893 aa15.58■□□□□ 0.08
VPS54-203ENST00000409558 COL5A2P05997 1499 aaPredicted RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 SPTLC2O15270 562 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 PDE8AO60658 829 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 TFCP2L1Q9NZI6 479 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 RANBP6O60518 1105 aaKnown RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 DPCR1Q3MIW9 517 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 FAM177A1Q8N128 213 aaPredicted RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 LCORLQ8N3X6 602 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 SMARCC2Q8TAQ2 1214 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 SLC12A7Q9Y666 1083 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 CIAO1O76071 339 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 ADD2P35612 726 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 PTF1AQ7RTS3 328 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 MRPS27Q92552 414 aaKnown RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 SOS2Q07890 1332 aaPredicted RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 ZBTB43O43298 467 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 CYP7A1P22680 504 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 IGHMBP2P38935 993 aaKnown RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 FAM98CQ17RN3 349 aaKnown RBP15.57■□□□□ 0.08
VPS54-203ENST00000409558 HPS5Q9UPZ3 1129 aa15.57■□□□□ 0.08
VPS54-203ENST00000409558 GUCY1A2P33402 732 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 IARSP41252 1262 aaKnown RBP15.56■□□□□ 0.08
VPS54-203ENST00000409558 ZNF75DP51815 510 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 CACTINQ8WUQ7 758 aaKnown RBP15.56■□□□□ 0.08
VPS54-203ENST00000409558 ZSWIM5Q9P217 1185 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 DHX16O60231 1041 aaKnown RBP15.56■□□□□ 0.08
VPS54-203ENST00000409558 SLC5A1P13866 664 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 EVX2Q03828 476 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 MAP3K12Q12852 859 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 ANGEL1Q9UNK9 670 aaKnown RBP15.56■□□□□ 0.08
VPS54-203ENST00000409558 SPDYE4A6NLX3 237 aa15.56■□□□□ 0.08
VPS54-203ENST00000409558 TEX13AQ9BXU3 409 aaPredicted RBP15.56■□□□□ 0.08
VPS54-203ENST00000409558 MYSM1Q5VVJ2 828 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 KRT40Q6A162 431 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 MB21D2Q8IYB1 491 aaPredicted RBP15.55■□□□□ 0.08
VPS54-203ENST00000409558 COBLO75128 1261 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 ZFYP08048 801 aaPredicted RBP15.55■□□□□ 0.08
VPS54-203ENST00000409558 CPLX2Q6PUV4 134 aaKnown RBP15.55■□□□□ 0.08
VPS54-203ENST00000409558 FBXO18Q8NFZ0 1043 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 GPR108Q9NPR9 543 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 ELP1O95163 1332 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 ZNF827Q17R98 1081 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 ZNF274Q96GC6 653 aaPredicted RBP15.55■□□□□ 0.08
VPS54-203ENST00000409558 UTP14AQ9BVJ6 771 aaKnown RBP15.55■□□□□ 0.08
VPS54-203ENST00000409558 NBPF3Q9H094 633 aa15.55■□□□□ 0.08
VPS54-203ENST00000409558 BTBD18B2RXH4 712 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 DYNLL1P63167 89 aaKnown RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 FAM160A1Q05DH4 1040 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 PUM3Q15397 648 aaKnown RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 IFNL3Q8IZI9 196 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 SLC3A2P08195 630 aaKnown RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 NAA16Q6N069 864 aaPredicted RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 MFSD6Q6ZSS7 791 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 PNOCQ13519 176 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 STX1AQ16623 288 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 GRAMD1CQ8IYS0 662 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 CEP57L1Q8IYX8 460 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 RCOR1Q9UKL0 485 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 LOC102724428A0A0B4J2F2 783 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 USP27XA6NNY8 438 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 RIOK3O14730 519 aaKnown RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 CSF1RP07333 972 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 SIK1P57059 783 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 NR5A1Q13285 461 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 NKX1-1Q15270 411 aaPredicted RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 APOA5Q6Q788 366 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 C3orf67Q6ZVT6 689 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 STAMQ92783 540 aa15.54■□□□□ 0.08
VPS54-203ENST00000409558 LLPHQ9BRT6 129 aaKnown RBP15.54■□□□□ 0.08
VPS54-203ENST00000409558 AFDNP55196 1824 aaKnown RBP15.53■□□□□ 0.08
VPS54-203ENST00000409558 ZNF202O95125 648 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 ITPK1Q13572 414 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 SNW1Q13573 536 aaKnown RBP15.53■□□□□ 0.08
VPS54-203ENST00000409558 TMC6Q7Z403 805 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 CPDO75976 1380 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 TUBGCP6Q96RT7 1819 aa15.53■□□□□ 0.08
VPS54-203ENST00000409558 FOXN1O15353 648 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 194.9 ms